BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5300.p         (54 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02416 [FR] COG0402 Cytosine deaminase and related metal-depen...    28   4.5  

>SMc02416 [FR] COG0402 Cytosine deaminase and related metal-dependent
           hydrolases Sme Sinorhizobium meliloti
          Length = 496

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 2   GRQAGRGQCGGQQQGQCQAGGGV----GRSWIHVARLRVRSASWPAWR 45
           G+ AG      ++Q Q Q  G +     RSW H    ++ S S+P W+
Sbjct: 447 GKVAGIDMIAAREQAQQQYDGLIAKYPDRSWRHPPVGKIFSPSYPVWK 494