BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5297.p         (50 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ZintL [L] COG0582 Integrase EcZ Escherichia coli O157:H7 EDL933        51   5e-07
ECs4534 [L] COG0582 Integrase Ecs Escherichia coli O157:H7             51   5e-07
Z4313 [L] COG0582 Integrase EcZ Escherichia coli O157:H7 EDL933        41   8e-04
ECs3843 [L] COG0582 Integrase Ecs Escherichia coli O157:H7             41   8e-04
RSc1871 [L] COG0582 Integrase Rso Ralstonia solanacearum               40   0.001

>ZintL [L] COG0582 Integrase EcZ Escherichia coli O157:H7 EDL933
          Length = 393

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 1  MSLTDTFVKQVKPIKPNGDKYADGGGMYLLVKATG-KYWRMDYR 43
          M+LTD  VK  KP K    K ADGGGMYLL+ A G KYWRM YR
Sbjct: 1  MALTDVKVKTAKP-KERPYKLADGGGMYLLINANGSKYWRMKYR 43


>ECs4534 [L] COG0582 Integrase Ecs Escherichia coli O157:H7
          Length = 393

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 1  MSLTDTFVKQVKPIKPNGDKYADGGGMYLLVKATG-KYWRMDYR 43
          M+LTD  VK  KP K    K ADGGGMYLL+ A G KYWRM YR
Sbjct: 1  MALTDVKVKTAKP-KERPYKLADGGGMYLLINANGSKYWRMKYR 43


>Z4313 [L] COG0582 Integrase EcZ Escherichia coli O157:H7 EDL933
          Length = 421

 Score = 40.8 bits (94), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 1  MSLTDTFVKQVKPIKPNGDKYADGGGMYLLVKATG-KYWRMDYR 43
          M+LTD  ++  KP      K  DG GM+LLV   G +YWR+ YR
Sbjct: 1  MALTDAKIRAAKPTD-KAYKLTDGAGMFLLVHPNGSRYWRLRYR 43


>ECs3843 [L] COG0582 Integrase Ecs Escherichia coli O157:H7
          Length = 421

 Score = 40.8 bits (94), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 1  MSLTDTFVKQVKPIKPNGDKYADGGGMYLLVKATG-KYWRMDYR 43
          M+LTD  ++  KP      K  DG GM+LLV   G +YWR+ YR
Sbjct: 1  MALTDAKIRAAKPTD-KAYKLTDGAGMFLLVHPNGSRYWRLRYR 43


>RSc1871 [L] COG0582 Integrase Rso Ralstonia solanacearum
          Length = 405

 Score = 40.4 bits (93), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 1  MSLTDTFVKQVKPI-KPNGDKYADGGGMYLLVKATG-KYWRMDYR 43
          M+LTDT ++  KP  KP   K  DGGG++L V   G +YWR+ YR
Sbjct: 1  MALTDTAIRNAKPADKP--IKLFDGGGLFLHVTPAGQRYWRLKYR 43