BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5296.p         (86 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl1961 [J] COG0024 Methionine aminopeptidase Cgl Corynebacteriu...    35   0.034
AGc2231 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    32   0.44 

>Cgl1961 [J] COG0024 Methionine aminopeptidase Cgl Corynebacterium
           glutamicum
          Length = 294

 Score = 35.4 bits (80), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 19  AYLSPLGLMGFTCFTKVSVRDIACLTV--SGIGWGGDTVKND------GINGGCNATSLD 70
           AY S LG  GFT  + +S+ +I C  +  S +   GD V  D      G++G CNAT L 
Sbjct: 95  AYPSDLGYRGFTKSSCISLNEIVCHGIPDSTVIEEGDIVNIDVTAFKHGVHGDCNATFLA 154

Query: 71  GRGQEKSPL 79
           G   E+  L
Sbjct: 155 GDVSEEHRL 163


>AGc2231 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 322

 Score = 31.6 bits (70), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 37  VRDIAC---LTVSGIGWGG---DTVKNDGINGGCNATSLDGRGQEKSPL 79
           V DIA    L   G+GWGG     V+ND  NG   A  L+   Q + PL
Sbjct: 223 VSDIATKYQLIKGGLGWGGLPASIVRNDLTNGSLKALELEAYEQGEYPL 271