BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5295.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3823 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase P...    30   1.0  
MJ0403 [R] COG1355 Predicted dioxygenase Mja Methanococcus janna...    28   6.3  
PA0788 [M] COG0744 Membrane carboxypeptidase (penicillin-binding...    28   7.0  

>PA3823 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase Pae
           Pseudomonas aeruginosa
          Length = 372

 Score = 30.4 bits (67), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 16  HSSSPSILLSIVHAPVFPGSLHEKIHAAAVGVFVAIGFDGLYLLHKGIGQ 65
           H  SPS L  IV      G +HE +   ++     IGFDGL +    +G+
Sbjct: 173 HGDSPSALFGIVQ-----GGMHEDLRLRSLDGLQEIGFDGLAIGGLSVGE 217


>MJ0403 [R] COG1355 Predicted dioxygenase Mja Methanococcus jannaschii
          Length = 287

 Score = 27.7 bits (60), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 60  HKGIGQGHSVFDGIW 74
           H G+G G SV DGIW
Sbjct: 90  HTGLGSGVSVMDGIW 104


>PA0788 [M] COG0744 Membrane carboxypeptidase (penicillin-binding protein)
           Pae Pseudomonas aeruginosa
          Length = 1041

 Score = 27.7 bits (60), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 62  GIGQGHSVFDGIWNWVGRRYRQ 83
           G G+   + DG+W W G  YRQ
Sbjct: 299 GYGEVTGLADGLWVWYGADYRQ 320