BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5279.p         (86 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv0003 [L] COG1195 Recombinational DNA repair ATPase (RecF pathw...    28   5.5  
MT0003 [L] COG1195 Recombinational DNA repair ATPase (RecF pathw...    28   5.6  

>Rv0003 [L] COG1195 Recombinational DNA repair ATPase (RecF pathway) Mtu
           Mycobacterium tuberculosis H37Rv
          Length = 385

 Score = 28.1 bits (61), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 26  AQVSPWRRRKAGSSASSAALNTVTSCVACHVPSGW 60
           A++   RRR   ++A SA    VT+ V   +P+GW
Sbjct: 329 AELDVMRRRALATAAESAEQVLVTAAVLEDIPAGW 363


>MT0003 [L] COG1195 Recombinational DNA repair ATPase (RecF pathway) MtC
           Mycobacterium tuberculosis CDC1551
          Length = 385

 Score = 28.1 bits (61), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 26  AQVSPWRRRKAGSSASSAALNTVTSCVACHVPSGW 60
           A++   RRR   ++A SA    VT+ V   +P+GW
Sbjct: 329 AELDVMRRRALATAAESAEQVLVTAAVLEDIPAGW 363