BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5263.p         (515 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1291 [T] COG2905 Predicted signal-transduction protein contain...    33   1.6  
RSc1762 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana...    31   5.5  

>VC1291 [T] COG2905 Predicted signal-transduction protein containing
           cAMP-binding and CBS domains Vch Vibrio cholerae
          Length = 637

 Score = 33.1 bits (74), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 3   LARQEFLGLLQRAADDEDGRHDHAADEEGNAPAPLADLQRRQGLA--HQVADQGRGHDGG 60
           L R   LG  +    ++DGRH+++ + +    APLADL R   LA   +  +     D  
Sbjct: 497 LNRTPPLGFFKNFVMEKDGRHNNSINLKRRGTAPLADLIRVHALAAGSRAKNSFERLDDV 556

Query: 61  LLAGRLP 67
           + AG LP
Sbjct: 557 IEAGLLP 563


>RSc1762 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum
          Length = 625

 Score = 31.2 bits (69), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 224 VGLSLSLSTAVLQRFSSHSSARCRIQARRLDGGLGFWRSEEVQQFLGGLRLMRAHHHT-G 282
           +GL L + T + + + S         A ++ GG G+ R   V+QF    RL   H  T G
Sbjct: 413 LGLLLDILTPIAKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHG 472

Query: 283 REGRQLLG 290
            +G  LLG
Sbjct: 473 IQGLDLLG 480