BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5252.p         (59 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PH1777 [J] COG0087 Ribosomal protein L3 Pho Pyrococcus horikoshii      28   6.4  
PAB2120 [J] COG0087 Ribosomal protein L3 Pab Pyrococcus abyssi         27   8.3  

>PH1777 [J] COG0087 Ribosomal protein L3 Pho Pyrococcus horikoshii
          Length = 362

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 34 HRPAPGSLSARP-DYAQKVMPAIRRWP 59
          HRP  GSL+  P   A+ ++P IR WP
Sbjct: 5  HRPRKGSLAFSPRKRAKSIVPRIRSWP 31


>PAB2120 [J] COG0087 Ribosomal protein L3 Pab Pyrococcus abyssi
          Length = 361

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 34 HRPAPGSLSARP-DYAQKVMPAIRRWP 59
          HRP  GSL+  P   A+ ++P IR WP
Sbjct: 5  HRPRRGSLAFSPRKRAKSIVPRIRSWP 31