BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5243.p         (47 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2777 [P] COG2116 Formate/nitrite family of transporters Pae Ps...    28   4.3  

>PA2777 [P] COG2116 Formate/nitrite family of transporters Pae
          Pseudomonas aeruginosa
          Length = 318

 Score = 28.5 bits (62), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 16 ESRATRPVPHRPCGGGVAGRNHLSCARGT 44
          + R + P P +P  GG AG+     A GT
Sbjct: 4  DKRTSPPTPRQPAKGGAAGKRQGHAAEGT 32