BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5215.p         (74 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa2408 [Q] COG3486 Lysine/ornithine N-monooxygenase Sme Sinorhi...    27   9.2  

>SMa2408 [Q] COG3486 Lysine/ornithine N-monooxygenase Sme Sinorhizobium
           meliloti
          Length = 456

 Score = 27.3 bits (59), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 13  RATTSVPGASAARCRRAMSGSTPTSNSRSRRRLAAGATVAWDARKAGW 60
           R T    G SAA C  A+       N  +   +AAGA++ W  R AG+
Sbjct: 191 RVTVIGSGQSAAECVLALL------NDLTPEMVAAGASIQWITRSAGF 232