BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5192.p         (66 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ZgalR [K] COG1609 Transcriptional regulators EcZ Escherichia col...    29   3.1  
ECs3694 [K] COG1609 Transcriptional regulators Ecs Escherichia c...    29   3.1  
galR [K] COG1609 Transcriptional regulators Eco Escherichia coli...    29   3.4  
BMEI0060 Non COG                                                       27   8.6  

>ZgalR [K] COG1609 Transcriptional regulators EcZ Escherichia coli
          O157:H7 EDL933
          Length = 343

 Score = 28.9 bits (63), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 10 AGMKRILPRSPKASRMGMLWIEITPKA-AFTPHCSRKAAMAQPTVTWGLVLG 60
          A + R++  SPKAS    L +    ++ ++ P+ + +A   Q T T GLV+G
Sbjct: 16 ATVSRVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQTTETVGLVVG 67


>ECs3694 [K] COG1609 Transcriptional regulators Ecs Escherichia coli
          O157:H7
          Length = 343

 Score = 28.9 bits (63), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 10 AGMKRILPRSPKASRMGMLWIEITPKA-AFTPHCSRKAAMAQPTVTWGLVLG 60
          A + R++  SPKAS    L +    ++ ++ P+ + +A   Q T T GLV+G
Sbjct: 16 ATVSRVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQTTETVGLVVG 67


>galR [K] COG1609 Transcriptional regulators Eco Escherichia coli K12
          Length = 343

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 10 AGMKRILPRSPKASRMGMLWIEITPKA-AFTPHCSRKAAMAQPTVTWGLVLG 60
          A + R++  SPKAS    L +    ++ ++ P+ + +A   Q T T GLV+G
Sbjct: 16 ATVSRVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQTTETVGLVVG 67


>BMEI0060 Non COG
          Length = 400

 Score = 27.3 bits (59), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 17  PRSPKASRMGMLWIEITPKAAFTP 40
           P+ PK S +  ++ EITP +A TP
Sbjct: 361 PKDPKRSNLYKMYYEITPASATTP 384