BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5182.p         (86 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0396 [NU] COG5008 Tfp pilus assembly protein, ATPase PilU Pae ...    30   1.2  

>PA0396 [NU] COG5008 Tfp pilus assembly protein, ATPase PilU Pae
           Pseudomonas aeruginosa
          Length = 382

 Score = 30.0 bits (66), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 4   SKKPSCNTKPRSLSACTMSNSSTTVLGVLLEKTSR-------CCSGYSARSCGRLRSSSS 56
           S K +    P + +  +   +  TVLGV+ E+  R       C    SAR  GR R S+ 
Sbjct: 27  SMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGRFRVSAF 86

Query: 57  TRPSTVACAGRRVPT 71
            + + V    RR+ T
Sbjct: 87  YQRNLVGMVLRRIET 101