BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5087.p         (82 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1957 [M] COG0810 Periplasmic protein TonB, links inner and out...    30   1.0  
AGpA265 [R] COG0673 Predicted dehydrogenases and related protein...    28   6.2  

>XF1957 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Xfa Xylella fastidiosa 9a5c
          Length = 299

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 21  KSGRVSRRRRCGPARSSSTTSRYRSRPLPVSWTRLK 56
           ++ R ++ R   P + +  TSRY  +PLPV  TRL+
Sbjct: 109 QTQRATQARAPEPIQPNVITSRYGKQPLPVQQTRLQ 144


>AGpA265 [R] COG0673 Predicted dehydrogenases and related proteins Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 441

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 41 SRYRSRPLPVSWTRLKRSSLGVDYRPRSSTSVTWAMATCTSM 82
          SR  SRP+ ++   L+   LG + R R+     W++A C S+
Sbjct: 2  SRANSRPIGLTVNALRLRHLGSNPRSRNVNGNAWSLAMCPSI 43