BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5034.p         (167 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO2649 [F] COG0209 Ribonucleotide reductase, alpha subunit Ype ...    29   5.2  
AGl3494_1 [T] COG2770 FOG Atu Agrobacterium tumefaciens strain C...    28   9.5  

>YPO2649 [F] COG0209 Ribonucleotide reductase, alpha subunit Ype Yersinia
           pestis
          Length = 693

 Score = 28.9 bits (63), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 5   ADMGIAVPSQRNLLFLRQYA-GHGSIPQELPRQPRIG 40
           AD GIA+P+Q++ + LRQ    HG   Q L   P  G
Sbjct: 533 ADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTG 569


>AGl3494_1 [T] COG2770 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 286

 Score = 28.1 bits (61), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 20  LRQYAGHGSIPQELPRQPRIGEAVDLIETL--QGVGDVGHSRGDEFQQRFGVIGGDQF 75
           L + A HG  PQE      I ++ D+++ +  + +G    SR  E QQ   V+ GD++
Sbjct: 92  LDKLAAHGVSPQEATSFEEIRKSADVLDRMEREAIGFYRSSRQSEAQQ---VLFGDEY 146