BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5018.p         (52 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1123 [R] COG0517 FOG Atu Agrobacterium tumefaciens strain C58...    28   4.0  

>AGl1123 [R] COG0517 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 143

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 18  AACAVRQDDRRQELPVRPADAAPGGVFAVRHA 49
            A  V  D+R Q +PV  ADA P GV  +R A
Sbjct: 88  TAWQVMVDNRVQNMPVLDADARPLGVLDIRDA 119