BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5002.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0518_2 Non COG                                                      43   3e-04
YPO1484 Non COG                                                        37   0.018
RSp0738_2 Non COG                                                      35   0.074
YPO0873 [R] COG5529 Pyocin large subunit Ype Yersinia pestis           35   0.12 
PA1508 [S] COG4104 Uncharacterized conserved protein Pae Pseudom...    32   0.94 

>RSp0518_2 Non COG
          Length = 322

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 21/146 (14%)

Query: 21  EGDQTCLSHGRAYAFQGA-RMACRKNCIIAHGFPR-STLTNGRSQVIHG----MKTSAGC 74
           +GD    SH    A  GA R+       I    PR  T+T G      G     + S G 
Sbjct: 177 KGDVVVESHTGNIALNGAKRITLNAGEEIVLNAPRVRTVTQGAQTTWGGGEIVEEASGGY 236

Query: 75  PLQST-LNEIDGVGSDDGEEIPVRFVQNDEGEWIGKMNEGYDQHFVVTDEQTGQALANRY 133
            ++S    +I G G+     +P     ND           +D+H  +TD+ TG+ +ANR 
Sbjct: 237 TIKSANFQQIGGGGAPAASNLPA----NDRH---------FDRHLRLTDQLTGEPIANRR 283

Query: 134 YRMT-CNGKVIEGKTDIDGKTSKVSS 158
           YR T  +G+V+EG +D  G    + S
Sbjct: 284 YRATLADGQVVEGVSDAQGYAKHLKS 309


>YPO1484 Non COG
          Length = 361

 Score = 37.4 bits (85), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 10 GDKAACGGTVIEGDQTCLSHGRAYAFQGARMACRKN----CIIAHGFPRSTLTNGRSQVI 65
          GD+  CGG +IEGD T +  G+A A +  R+ C K+     II H  P  ++ NGR +  
Sbjct: 19 GDETTCGGVIIEGDATHVLMGKAVAREQDRVTCGKHPGTYIIIGH-VPGDSV-NGR-KFA 75

Query: 66 HGMKTSAGCPLQS 78
            + + + CP ++
Sbjct: 76 GTLNSQSNCPCKA 88


>RSp0738_2 Non COG
          Length = 289

 Score = 35.4 bits (80), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 114 YDQHFVVTDEQTGQALANRYYRM-TCNGKVIEGKTDIDGKTSKVSSDDPVEVTI 166
           ++Q     +E+TG  +AN  Y++ T  G V  G TDI+GKT +V +    +VT+
Sbjct: 226 FEQQMRAINERTGDPIANLPYKIVTEGGDVHYGTTDIEGKTIRVPTIKSEKVTV 279


>YPO0873 [R] COG5529 Pyocin large subunit Ype Yersinia pestis
          Length = 512

 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 6  WIRYGDKAACGGTVIEGDQTCLSHGRAYAFQGARMACRKNC---IIAHGFPRSTLTNGRS 62
          ++  GD+  CGG + EG+ T    GRA A +  R+ C K+    II    P  T+  GR 
Sbjct: 6  YLVVGDETTCGGVITEGEPTHTIMGRAVAREQDRITCGKHPGTYIIVGHIPGDTIL-GR- 63

Query: 63 QVIHGMKTSAGCPLQS 78
          +    + +++ CP ++
Sbjct: 64 KFAGSLHSTSNCPCKA 79


>PA1508 [S] COG4104 Uncharacterized conserved protein Pae Pseudomonas
          aeruginosa
          Length = 86

 Score = 31.6 bits (70), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 7  IRYGDKAACGGTVIEGDQTCLSHGRAYAFQGARMACRKNCIIAHGFP---RSTL--TNGR 61
          IR GD  + GGTVIE       +G+  A  G ++ C    +    FP    S L   NG 
Sbjct: 4  IRLGDTTSHGGTVIEAFGQTDLNGKPMAGVGHQVVCP---LCKGTFPITEGSALLDVNGV 60

Query: 62 SQVIHGMKTSAGCPLQST 79
             +HGMKT+ G  L ++
Sbjct: 61 PVALHGMKTACGASLIAS 78