BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4997.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPMT1.40c [L] COG0419 ATPase involved in DNA repair Ype Yersinia...    30   1.5  

>YPMT1.40c [L] COG0419 ATPase involved in DNA repair Ype Yersinia pestis
          Length = 638

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 40  VCAASGSPAITCGRKSCSEKLQSAWSSCCSSARSR 74
           V    G+P +TCG+  C E L +   S    AR+ 
Sbjct: 321 VSTKVGAPCVTCGKPYCEEDLSTVKESFIEQARNE 355