BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4995.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSO0420 [L] COG1110 Reverse gyrase Sso Sulfolobus solfataricus         30   2.9  
DR1903 [S] COG1307 Uncharacterized protein conserved in bacteria...    29   4.0  
MTH1015 [R] COG1123 ATPase components of various ABC-type transp...    29   4.1  
PH1152 [S] COG1916 Uncharacterized homolog of PrgY (pheromone sh...    29   6.6  

>SSO0420 [L] COG1110 Reverse gyrase Sso Sulfolobus solfataricus
          Length = 1242

 Score = 30.0 bits (66), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 116 AQHNAGACGARLAHQAADVGDLLRDVAVEVD 146
           +Q+    CG+R+     +V D+LR +A+EVD
Sbjct: 717 SQNKCPICGSRIVTDKTEVVDILRKLALEVD 747


>DR1903 [S] COG1307 Uncharacterized protein conserved in bacteria Dra
           Deinococcus radiodurans
          Length = 288

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 60  IDEDLVVGQFGVVVGGQDDGRL----RGQRVTGHHVRQEILLGKAPERLVQLLQFGTVAR 115
           ID+++V   F   + G   GRL     G R T H      + G+   R VQ++  GTV+ 
Sbjct: 62  IDDEVVARTFEAALQGSKSGRLVHVASGSRFTPHFEVAARVAGQFGVR-VQVIDGGTVSY 120

Query: 116 AQHNAGACGARLAHQAADVGDLLRDVA---------VEVDSGHAVSIVGR-----AAVCH 161
           A        A LA Q AD G + R +A           V+S   + + GR     A + +
Sbjct: 121 ALGVQALHAAHLADQGADFGQIARALAELRERTLLTFAVESLDFLRVNGRIGNVAAFIGN 180

Query: 162 WEGIKKAL 169
           W G++  L
Sbjct: 181 WLGLRPLL 188


>MTH1015 [R] COG1123 ATPase components of various ABC-type transport
           systems, contain duplicated ATPase Mth
           Methanothermobacter thermautotrophicus
          Length = 540

 Score = 29.3 bits (64), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 136 DLLRDVAVEVDSGHAVSIVGRAA 158
           ++LRD++VE+D G  + I+GR+ 
Sbjct: 27  EVLRDISVEIDEGKVLGILGRSG 49


>PH1152 [S] COG1916 Uncharacterized homolog of PrgY (pheromone shutdown
           protein) Pho Pyrococcus horikoshii
          Length = 223

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 18  GIAAFLVEAVAVTAGGLVGVVGGNDFQQAFEAG 50
           GI A+L++ V +  G  VGV+ G++  +AFE  
Sbjct: 68  GILAYLLQGVEMALGKQVGVLPGSEMIEAFEVA 100