BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4989.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MT0975 [E] COG1605 Chorismate mutase MtC Mycobacterium tuberculo...    30   2.3  

>MT0975 [E] COG1605 Chorismate mutase MtC Mycobacterium tuberculosis
           CDC1551
          Length = 217

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 79  MTRVIAARRPVR--------WVPPSRCGMLLVKHSTCSLKASFHCIDTSTDTSVPWSDCF 130
           + R+IA R+ +R          PPS C    V  +  S         T T    PWS CF
Sbjct: 32  LARLIATRQVLRRHHPILGALFPPSFCAGASVDGTLGSCSTRSADFSTGTGQRCPWSSCF 91

Query: 131 SPVAWKMVGLRM-LLFLLMYSTKPRVP 156
               W   G    LL    Y  +P  P
Sbjct: 92  RRAPWSASGFGARLLCEAQYRMRPEPP 118