BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4944.p         (55 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB1841 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    30   1.7  
NMA0615 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    30   1.7  
MT1969 [N] COG5651 PPE-repeat proteins MtC Mycobacterium tubercu...    29   2.1  

>NMB1841 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Nme Neisseria meningitidis
           MC58
          Length = 231

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 24  QRHPGRWSDRGRVVRAVMVDAMAGAW 49
           Q+H G W D G V R     A+AGAW
Sbjct: 205 QKHTGLWLDVGTVCRLKEAQALAGAW 230


>NMA0615 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) NmA Neisseria meningitidis
           Z2491
          Length = 231

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 24  QRHPGRWSDRGRVVRAVMVDAMAGAW 49
           Q+H G W D G V R     A+AGAW
Sbjct: 205 QKHTGLWLDVGTVCRLKEAQALAGAW 230


>MT1969 [N] COG5651 PPE-repeat proteins MtC Mycobacterium tuberculosis
          CDC1551
          Length = 1013

 Score = 29.3 bits (64), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 10 DRTEHRPRPAIHPHQRHPGRW 30
          +R     R   H HQ HPGRW
Sbjct: 4  ERVSDDGRVTFHQHQAHPGRW 24