BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4941.p         (118 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ylmH [S] COG2302 Uncharacterized conserved protein, contains ...    28   5.8  

>BS_ylmH [S] COG2302 Uncharacterized conserved protein, contains S4-like
           domain Bsu Bacillus subtilis
          Length = 257

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 4   KSLSRISARVAADFSPIQLEGSSFSILGYSRCSQSTMRSAMK 45
             L +++ +V  D S I  EG   SI G+ RCS + +    K
Sbjct: 204 NGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTK 245