BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4689.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0549 [T] COG0642 Signal transduction histidine kinase Rso Ral...    30   1.7  

>RSc0549 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 513

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 46  MWPGCTRSDGLAPLEAATWMVRARSAAEIPVVTPSAASMETVKLV 90
           +W G TR  GLAPL A    +RARS  +   +   AA  E   LV
Sbjct: 220 VWFGLTR--GLAPLNAIQERIRARSPGDTSPIDEGAAPQELTPLV 262