BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4673.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3337 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum 295 6e-80 Cgl0140 [R] COG0730 Predicted permeases Cgl Corynebacterium glut... 159 6e-39 SA1536 [R] COG0730 Predicted permeases Sau Staphylococcus aureus... 153 3e-37 AGc2926 [R] COG0730 Predicted permeases Atu Agrobacterium tumefa... 148 9e-36 FN1706 [R] COG0730 Predicted permeases Fnu Fusobacterium nucleatum 145 8e-35 >RSc3337 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum Length = 252 Score = 295 bits (755), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 149/252 (59%), Positives = 189/252 (75%) Query: 2 LDDLVLCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAI 61 +D ++L A F+AGLIDAV GGGGLV +P LFS +PN APATL+GTNK+A + GT+ AA Sbjct: 1 MDFVLLAVAGFLAGLIDAVAGGGGLVQIPALFSAYPNLAPATLIGTNKLASMSGTATAAA 60 Query: 62 NFARKVAVRWSTVTPAAMAAFACSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDF 121 + R V + W PA + AF CS GA+ +THIP + +R+ALPFVL+ + +YT+ KKD Sbjct: 61 RYGRTVRIYWGATAPAVVTAFLCSLLGAWALTHIPAEPLRRALPFVLVLLLVYTVAKKDL 120 Query: 122 GTTHAPTLTGSREMIYAALIGAVIGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKF 181 G HAP+L G RE A L GA+IGFYDGVFGPGTGSFL+ +FVRVF YDFL ASA +K Sbjct: 121 GAEHAPSLAGWRERGVALLAGAIIGFYDGVFGPGTGSFLMIVFVRVFGYDFLHASASTKI 180 Query: 182 VNISTNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGA 241 VN++TN+AAL GHV WQLGL+MAV N+ G+ G+ LA+KHGS FVRK+F+ VV A Sbjct: 181 VNLATNVAALLLLASKGHVWWQLGLVMAVANVLGNQAGSYLALKHGSRFVRKMFIAVVLA 240 Query: 242 LILKSSYDAFLK 253 LILK++YDAFL+ Sbjct: 241 LILKTAYDAFLR 252 >Cgl0140 [R] COG0730 Predicted permeases Cgl Corynebacterium glutamicum Length = 260 Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 140/236 (59%), Gaps = 4/236 (1%) Query: 6 VLCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINFAR 65 +L A VAG IDAV+GGGGLVL+P + +V P AP T L +NK+A V GT++AA R Sbjct: 12 ILIAGAAVAGWIDAVIGGGGLVLIPLILAVMPQLAPVTALASNKLAAVTGTASAAFTLVR 71 Query: 66 KVAVRWSTVTPAAMAAFACSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTH 125 +V + + A CS GA + I ++R + +++ V L + K +FGT Sbjct: 72 RVKPDKKLLALYVLVAAVCSGAGALAASLIDKQIMRPLIIVLMLVVGLIVVFKPNFGTGE 131 Query: 126 APTL-TGSREMIYAALIG-AVIGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVN 183 + L TG + +AA++ +I YDG+FGPGTG FL+ F + S +FLS++A++K VN Sbjct: 132 SKALPTGWKR--WAAIVAVGLIAAYDGIFGPGTGMFLIMAFTALLSQNFLSSAAMAKVVN 189 Query: 184 ISTNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVV 239 +TNL AL F GH+ W LGL++AV N+ G+ +G R + G+ +R L +V Sbjct: 190 TATNLGALIVFIIGGHMWWTLGLVLAVANVAGAQLGARTVLGGGTRLIRYALLTLV 245 >SA1536 [R] COG0730 Predicted permeases Sau Staphylococcus aureus N315 Length = 256 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 143/239 (59%), Gaps = 5/239 (2%) Query: 12 FVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINFARKVAVRW 71 F+A ID+VVGGGGL+ P L ++ P+ LGTNK+A G+ + I F R V Sbjct: 16 FIAAFIDSVVGGGGLISTPALLAI--GLPPSVALGTNKLASSFGSLTSMIKFIRSGKVDL 73 Query: 72 STVTPAAMAAFACSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTHAPT-LT 130 V F S GAY+ T +P+ +++ + L +V ++TL KKD+G T T T Sbjct: 74 FVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFT 133 Query: 131 GSREMIYAALIGAVIGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVNISTNLAA 190 + +I+AAL +IGFYDG G GTGSF++F+ + VF +DFLSA+ +K +N ++N+ A Sbjct: 134 FKKAIIFAALF-ILIGFYDGFVGGGTGSFMLFVLL-VFGFDFLSAAGNAKVLNFASNIGA 191 Query: 191 LCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGALILKSSYD 249 L F G V + +GL+MA+ I GS G A+K G +V+ LF+++ LILK+++D Sbjct: 192 LVLFMVLGQVDYVIGLIMAISMIAGSYTGAHFAIKQGVGYVKVLFIIITAILILKNAFD 250 >AGc2926 [R] COG0730 Predicted permeases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 288 Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 4/246 (1%) Query: 5 LVLCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINFA 64 +VL A AG ID++ GGGGL+ +P + + AP LGTNK+ G+++A + +A Sbjct: 31 IVLFCVAIFAGFIDSIAGGGGLITIPAMMIM--GIAPLDTLGTNKLQAQFGSASATLAYA 88 Query: 65 RKVAVRWSTVTPAAMAAFACSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTT 124 R+ V P + A A GA +P DL+R +PF+LI +ALY K Sbjct: 89 RRGHVNLKEQLPMGLMAMAGGMLGALTAAFVPADLLRTIMPFLLITIALYFALKPQLSDI 148 Query: 125 HAPTLTGSREMIYAALIGAVIGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVNI 184 + ++ ++ +IGFYDGVFGPG GSF + FV + + L A+A +K +N+ Sbjct: 149 DSHRRI--TPFVFGLMVAPLIGFYDGVFGPGAGSFYMLAFVALAGFGMLKATAHTKLLNL 206 Query: 185 STNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGALIL 244 +N F G V+W+LGL M + G+ VG+R AMK+G+ +R L +V A+ Sbjct: 207 GSNFGGFVVFAMGGAVLWKLGLAMGLGQFIGAQVGSRFAMKNGAKIIRPLLVVSCLAMAT 266 Query: 245 KSSYDA 250 K DA Sbjct: 267 KLLVDA 272 >FN1706 [R] COG0730 Predicted permeases Fnu Fusobacterium nucleatum Length = 254 Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 138/248 (55%), Gaps = 4/248 (1%) Query: 5 LVLCGAAFVAGLIDAVVGGGGLVLVPTLFSV-FPNTAPATLLGTNKVAGVMGTSAAAINF 63 L+L F+A ++DA+ GGGGL+ +P F+V FP P LGTNK++ + T A+A F Sbjct: 9 LILAVFCFIAAVVDAISGGGGLISLPAYFAVGFP---PHMALGTNKLSAFLSTFASAFKF 65 Query: 64 ARKVAVRWSTVTPAAMAAFACSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGT 123 + V V+ + A + G I T + +LI V LY LK K G Sbjct: 66 WKAKKVNVEIVSKLFAFSLAGAVLGVKTAVSIDTKYFKPISFGILILVFLYALKNKSLGE 125 Query: 124 THAPTLTGSREMIYAALIGAVIGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVN 183 + T + +I ++ +GFYDG GPGT +FL+F +++F DF SAS +K +N Sbjct: 126 NNYYKGTTPKTIILGKIMAFCLGFYDGFLGPGTAAFLMFCLIKIFKLDFSSASGNTKILN 185 Query: 184 ISTNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGALI 243 +S+N A+L F + G + W G+ +A+ G+++G+RLA+ G+ F++ +FLVV LI Sbjct: 186 LSSNFASLVVFAFLGKLNWAYGISIAIVMTFGAIIGSRLAILKGNKFIKPVFLVVTIVLI 245 Query: 244 LKSSYDAF 251 LK S + F Sbjct: 246 LKMSVEIF 253