BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4660.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0326 Non COG                                                       127   7e-30
NMB1218 [S] COG2921 Uncharacterized conserved protein Nme Neisse...    84   9e-17
NMA1380 [S] COG2921 Uncharacterized conserved protein NmA Neisse...    84   9e-17
YPO2600 [S] COG2921 Uncharacterized conserved protein Ype Yersin...    56   2e-08
PA3998 [S] COG2921 Uncharacterized conserved protein Pae Pseudom...    52   3e-07

>RSc0326 Non COG
          Length = 97

 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 69/90 (76%)

Query: 4  PTISPEESLIEYPSDFPIKVVGITHDAFAETIVAMVIEHDPEFHAGKVEMRPSTQGKYLS 63
          P   P ESLIEYPSDFPIKV+G   D FAETIV +V + DPEFH G++EMRPS+ G YL 
Sbjct: 8  PATPPRESLIEYPSDFPIKVMGKMQDDFAETIVQLVQQFDPEFHTGRMEMRPSSGGNYLG 67

Query: 64 LTLTVRATSRTQLDNIYRALSTHEMVKFVL 93
          LT+ VRATSR QLD +YRAL+ H MVK VL
Sbjct: 68 LTVIVRATSREQLDALYRALTAHPMVKVVL 97


>NMB1218 [S] COG2921 Uncharacterized conserved protein Nme Neisseria
          meningitidis MC58
          Length = 91

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 55/83 (66%)

Query: 11 SLIEYPSDFPIKVVGITHDAFAETIVAMVIEHDPEFHAGKVEMRPSTQGKYLSLTLTVRA 70
          SLIE+P  FP+KV+G  H  F + ++  V  H P+  A  +  RPS++G Y   T+ V+ 
Sbjct: 9  SLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDTQAHHITTRPSSKGNYTGATVQVKV 68

Query: 71 TSRTQLDNIYRALSTHEMVKFVL 93
           ++ QLDNIYRAL++HE+VK VL
Sbjct: 69 ENQEQLDNIYRALTSHELVKVVL 91


>NMA1380 [S] COG2921 Uncharacterized conserved protein NmA Neisseria
          meningitidis Z2491
          Length = 91

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 55/83 (66%)

Query: 11 SLIEYPSDFPIKVVGITHDAFAETIVAMVIEHDPEFHAGKVEMRPSTQGKYLSLTLTVRA 70
          SLIE+P  FP+KV+G  H  F + ++  V  H P+  A  +  RPS++G Y   T+ V+ 
Sbjct: 9  SLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDTQAHHITTRPSSKGNYTGATVQVKV 68

Query: 71 TSRTQLDNIYRALSTHEMVKFVL 93
           ++ QLDNIYRAL++HE+VK VL
Sbjct: 69 ENQEQLDNIYRALTSHELVKVVL 91


>YPO2600 [S] COG2921 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 87

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 12 LIEYPSDFPIKVVGITHDAFAETIVAMVIEHDPEFHAGKVEMRPSTQGKYLSLTLTVRAT 71
          L+E+P  F  KV+GI      + +V +V  H P  +  +V  +PS++G Y S+++T+ AT
Sbjct: 8  LLEFPCSFTYKVMGIAEPQLVDQVVEVVQRHAPGEYTPQV--KPSSKGNYHSVSITITAT 65

Query: 72 SRTQLDNIYRALSTHEMVKFVL 93
             Q++ +Y  L   E+VK VL
Sbjct: 66 HIDQVETLYEELGNLELVKMVL 87


>PA3998 [S] COG2921 Uncharacterized conserved protein Pae Pseudomonas
          aeruginosa
          Length = 93

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 4  PTISPEESLIEYPSD-FPIKVVGITHDAFAETIVAMVIEHDPEFHAGKVEMRPSTQGKYL 62
          P + P +  IE+P + +PIKV+G   + F++ +V ++  H P+     + +R S++G++L
Sbjct: 5  PDVQPPK--IEFPCERYPIKVIGDAGEGFSDLVVEIIQRHAPDLDVETLVVRDSSKGRFL 62

Query: 63 SLTLTVRATSRTQLDNIYRALSTHEMVKFVL 93
          S+ + + AT   QL  I+  L     V  VL
Sbjct: 63 SVQVLITATDVDQLQAIHNDLRATGRVHMVL 93