BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4642.p (411 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2346 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 415 e-115 PA2347 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 405 e-113 AGpA773 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu... 398 e-110 PA2325 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 392 e-109 mlr5225 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti 390 e-108 >PA2346 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 411 Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust. Identities = 222/395 (56%), Positives = 288/395 (72%), Gaps = 5/395 (1%) Query: 17 AQRITSQAQALQVAAELAAEFAQSAAQRDRERILPFQQIERFSHSGLWAITVPRSHGGIG 76 A+ I + AQALQ A E+A + AA RDRER LP+Q++E F+ GL I +PR+HGG Sbjct: 20 ARLIENDAQALQAAHEVAGLARREAALRDRERRLPWQELELFTRLGLGGIGIPRAHGGAQ 79 Query: 77 ASWQTVAEVFRLISAADPSIGQIPQNHFGNLNLIANFASQAQQRFFFGEVLDGARLGNAG 136 S T+AEVFR+I AADP++GQIPQN FG L++I N AS AQ+R F +LDG RL NAG Sbjct: 80 VSHVTLAEVFRVICAADPALGQIPQNQFGLLSVIDNVASPAQKRKLFRGILDGRRLANAG 139 Query: 137 PERNGKNVLDVRTRATLDTEAGDGSYRLNGTRFYSTGALYAHWIPTRAIDDDGQPLVVYN 196 PERN ++ L+++ R D GDG YR++G +FYSTGAL+AHW+ +AID++ + ++++ Sbjct: 140 PERNTRHTLELKARVRRD---GDG-YRVSGEKFYSTGALFAHWVAVKAIDEEERAVMLFV 195 Query: 197 RHDAAGLRVIDDWSSFGQRTTASGTVVFDNVRVPAEQVLPLKDTLQRPNNIGPVSQLLQA 256 A GLR++DDWS FGQRTTASGTV+ D V V + ++ + P+ G VSQL+QA Sbjct: 196 ERGAPGLRIVDDWSGFGQRTTASGTVLLDEVPVAGDMLIHNGLLAEIPSLQGAVSQLIQA 255 Query: 257 AIDAGIAQAAVQDTIAFVTTRSRPYADSGLERAADDPYILRDIGNLSLRLHAAEALLEDA 316 AIDAGIAQAA+ D AFV RSRP+ D+ +ERA+D+ Y + ++G L + LHAA ALLE A Sbjct: 256 AIDAGIAQAALDDAQAFVRERSRPWIDAQVERASDELYSIAEVGRLQIELHAANALLEKA 315 Query: 317 AALLDALPAQ-ISFEQMAQASVAVAEAKVLSTEVALQASEKLFELSGSAATLATHNLDRH 375 +LD + A+ + E A+AS+AVAEAKVLSTE++L ASEKLFEL+GS ATLA NLDRH Sbjct: 316 GQVLDEVAARPVDAESAARASIAVAEAKVLSTEISLAASEKLFELAGSRATLAEFNLDRH 375 Query: 376 WRNARVHTLHDPVRWKYFAVGNYALNGTPPPRHNW 410 WRNAR HTLHDPVRWK AVG+Y LNG P RH+W Sbjct: 376 WRNARTHTLHDPVRWKVHAVGDYYLNGARPARHSW 410 >PA2347 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 405 Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust. Identities = 216/394 (54%), Positives = 275/394 (69%), Gaps = 4/394 (1%) Query: 16 SAQRITSQAQALQVAAELAAEFAQSAAQRDRERILPFQQIERFSHSGLWAITVPRSHGGI 75 +A RI S +AL+ A ELAA FA+ + QRDRER LP +++E FS SGLW I VPR +GG Sbjct: 14 AAHRIGSDDEALETARELAALFARESIQRDRERRLPLEELELFSRSGLWGIAVPREYGGA 73 Query: 76 GASWQTVAEVFRLISAADPSIGQIPQNHFGNLNLIANFASQAQQRFFFGEVLDGARLGNA 135 G S T+A+V ++SAAD S+GQIPQNHF L ++ S AQ+ FG L G R GNA Sbjct: 74 GVSRVTLAKVVAIVSAADSSLGQIPQNHFYALEVLRVNGSPAQKGRLFGAALAGERFGNA 133 Query: 136 GPERNGKNVLDVRTRATLDTEAGDGSYRLNGTRFYSTGALYAHWIPTRAIDDDGQPLVVY 195 E + + RTR D GDG YRL+G +FY TGALYA +PT A+DD+G+ + + Sbjct: 134 LAEIGTRTASERRTRLRAD---GDG-YRLDGRKFYCTGALYAQRVPTLAVDDEGRQQLAF 189 Query: 196 NRHDAAGLRVIDDWSSFGQRTTASGTVVFDNVRVPAEQVLPLKDTLQRPNNIGPVSQLLQ 255 D+AGL ++DDWS FGQRTT SG+ +FD V V AE V+ +D +RP +GP++Q+L Sbjct: 190 VPRDSAGLEIVDDWSGFGQRTTGSGSALFDRVAVAAEDVVSFQDAFERPTTVGPLAQILH 249 Query: 256 AAIDAGIAQAAVQDTIAFVTTRSRPYADSGLERAADDPYILRDIGNLSLRLHAAEALLED 315 AAIDAGIA+ A +DT+ FV R+RP+ DSG+++A+DDP + +IG L++RLHAAEALLE Sbjct: 250 AAIDAGIARGAFEDTLRFVRERARPWVDSGVDKASDDPLTIHEIGRLAIRLHAAEALLER 309 Query: 316 AAALLDALPAQISFEQMAQASVAVAEAKVLSTEVALQASEKLFELSGSAATLATHNLDRH 375 A +LD A+ E +A AS+AVAEA+ L+TEVAL A KL EL GS A LA LDRH Sbjct: 310 AGRVLDRATAEPDAESVAAASIAVAEARALTTEVALLAGSKLIELGGSRACLAELGLDRH 369 Query: 376 WRNARVHTLHDPVRWKYFAVGNYALNGTPPPRHN 409 WRNARVHTLHDPVRWKY AVG+Y LNG PPR Sbjct: 370 WRNARVHTLHDPVRWKYHAVGDYYLNGRLPPRRG 403 >AGpA773 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 425 Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/401 (50%), Positives = 270/401 (67%), Gaps = 5/401 (1%) Query: 11 RPGARSAQRITSQAQALQVAAELAAEFAQSAAQRDRERILPFQQIERFSHSGLWAITVPR 70 RP R A I S A+A++VA +AAE A AA RDR+RI P ++++ FS SGLW+I VP+ Sbjct: 30 RPTER-AHIIRSDAEAIEVAKIVAAEIAPGAALRDRDRIWPVKELDAFSQSGLWSINVPK 88 Query: 71 SHGGIGASWQTVAEVFRLISAADPSIGQIPQNHFGNLNLIANFASQAQQRFFFGEVLDGA 130 GG S+ T+A+V ++SAAD SIGQI QNH G + I + +AQQ+ F EVL G Sbjct: 89 KFGGPEVSYATLAKVIEIVSAADSSIGQIAQNHLGVVAAIRTVSDEAQQKLLFAEVLRGT 148 Query: 131 RLGNAGPERNGKNVLDVRTRATLDTEAGDGSYRLNGTRFYSTGALYAHWIPTRAIDDDGQ 190 R GNA E K D T+ +AGD +NG +FYS+GAL AH +P A+DD+G+ Sbjct: 149 RFGNAFSEFGSKRAADFETKFV---DAGDHVI-VNGQKFYSSGALLAHLVPIVALDDEGR 204 Query: 191 PLVVYNRHDAAGLRVIDDWSSFGQRTTASGTVVFDNVRVPAEQVLPLKDTLQRPNNIGPV 250 DA GL VIDDWSSFGQRTT SGTV+ +NV+VP ++P P G + Sbjct: 205 AWYAIAERDAPGLTVIDDWSSFGQRTTLSGTVILNNVKVPKTYLVPGYKGYAEPTADGAI 264 Query: 251 SQLLQAAIDAGIAQAAVQDTIAFVTTRSRPYADSGLERAADDPYILRDIGNLSLRLHAAE 310 Q++Q A+D GIA+AA+ +T++FV T+SR + DSG++ A DDPY ++ +G+L+LRLHAA+ Sbjct: 265 FQIIQVAVDTGIARAAIDETVSFVRTKSRAWVDSGVDHAWDDPYTIQAVGDLTLRLHAAQ 324 Query: 311 ALLEDAAALLDALPAQISFEQMAQASVAVAEAKVLSTEVALQASEKLFELSGSAATLATH 370 ALLE A +D + E +A+A V AEAK+L+TE+A+ A+ KLFEL+G+ +TLA H Sbjct: 325 ALLEKAGYAIDRAIQNPNAETVAEAQVVTAEAKILATEIAIAATNKLFELAGTRSTLAEH 384 Query: 371 NLDRHWRNARVHTLHDPVRWKYFAVGNYALNGTPPPRHNWS 411 +LDRHWRNAR HTLHDPVRWKY +G Y LNG PP H WS Sbjct: 385 HLDRHWRNARTHTLHDPVRWKYSILGKYFLNGEKPPLHAWS 425 >PA2325 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 411 Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/406 (52%), Positives = 285/406 (70%), Gaps = 6/406 (1%) Query: 7 ATPYR-PGARS-AQRITSQAQALQVAAELAAEFAQSAAQRDRERILPFQQIERFSHSGLW 64 A PYR P R+ A+RI A+A++VA ELA FA+ A+ RDR+R LP ++E FS SGLW Sbjct: 9 ADPYRQPLPRTPARRIADDAEAIRVARELAGLFAEEASLRDRQRRLPVAELEAFSQSGLW 68 Query: 65 AITVPRSHGGIGASWQTVAEVFRLISAADPSIGQIPQNHFGNLNLIANFASQAQQRFFFG 124 I+VPR++GG ++T+AEV + I+A DPS+ Q+PQNH L+ + S+ Q+RFF+G Sbjct: 69 GISVPRAYGGAEVGYRTLAEVLKTIAAVDPSLAQLPQNHLAVLDHLRLDGSEEQKRFFYG 128 Query: 125 EVLDGARLGNAGPERNGKNVLDVRTRATLDTEAGDGSYRLNGTRFYSTGALYAHWIPTRA 184 VLDG R GNA ER+ + V + +TR D GDG +R++G +FYS+GAL AHW+P Sbjct: 129 LVLDGVRFGNAFSERHSRTVAEFQTRVLAD---GDG-FRIDGRKFYSSGALLAHWVPAVG 184 Query: 185 IDDDGQPLVVYNRHDAAGLRVIDDWSSFGQRTTASGTVVFDNVRVPAEQVLPLKDTLQRP 244 +D + + + + DA GL VIDDWS FGQRTTASGTV+ DNVRVPAE V+P+ RP Sbjct: 185 LDAEQRAHLAFIPRDAPGLTVIDDWSGFGQRTTASGTVILDNVRVPAEHVIPVHRAFDRP 244 Query: 245 NNIGPVSQLLQAAIDAGIAQAAVQDTIAFVTTRSRPYADSGLERAADDPYILRDIGNLSL 304 G VSQ +QAAIDAGIA+ + +T+ V +RP+ D+ + A +DPY ++ +G+L + Sbjct: 245 TAAGAVSQFIQAAIDAGIARGILAETVQQVRRHARPWIDANQQHAWEDPYTIQQVGDLRI 304 Query: 305 RLHAAEALLEDAAALLDALPAQISFEQMAQASVAVAEAKVLSTEVALQASEKLFELSGSA 364 R+ AAEA+L+ AA ++A A E +A AS+AVAEAKVL+TE AL A+ +LFEL+G+ Sbjct: 305 RVRAAEAVLDLAADAIEAALAAPDEESVAAASIAVAEAKVLTTEAALLAANRLFELAGTR 364 Query: 365 ATLATHNLDRHWRNARVHTLHDPVRWKYFAVGNYALNGTPPPRHNW 410 +TL NLDRHWRNAR HTLHDPVRWKY A+GNY LNG PPRH W Sbjct: 365 STLEELNLDRHWRNARTHTLHDPVRWKYHAIGNYQLNGVKPPRHAW 410 >mlr5225 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti Length = 415 Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/375 (52%), Positives = 255/375 (68%), Gaps = 4/375 (1%) Query: 37 FAQSAAQRDRERILPFQQIERFSHSGLWAITVPRSHGGIGASWQTVAEVFRLISAADPSI 96 F + +++RDRER+ P +++ FS SGLW+I VP++ GG S+ T+A+V +ISAAD SI Sbjct: 45 FVKESSRRDRERVWPVAELDAFSQSGLWSINVPKAFGGPEVSYATLAKVIEIISAADSSI 104 Query: 97 GQIPQNHFGNLNLIANFASQAQQRFFFGEVLDGARLGNAGPERNGKNVLDVRTRATLDTE 156 GQI QNH G + I + QQ+ F EVL+G R GNA E K D TR T + Sbjct: 105 GQIAQNHLGVVAAIRTVSDADQQKLLFAEVLNGTRFGNAFSEFGSKRAADFETRFT---D 161 Query: 157 AGDGSYRLNGTRFYSTGALYAHWIPTRAIDDDGQPLVVYNRHDAAGLRVIDDWSSFGQRT 216 AGD +NG +FYS+GAL AH +P A+DD+G+ A GL VIDDWSSFGQRT Sbjct: 162 AGD-HVVVNGRKFYSSGALLAHLVPIVALDDEGRAWYAIADRGAPGLTVIDDWSSFGQRT 220 Query: 217 TASGTVVFDNVRVPAEQVLPLKDTLQRPNNIGPVSQLLQAAIDAGIAQAAVQDTIAFVTT 276 T SGTV+ DNV+VP ++P RP G + Q++Q A+D GIAQAA+ +T+ FV T Sbjct: 221 TLSGTVIIDNVKVPKTFLVPGYKGYDRPTADGAIFQIIQVAVDTGIAQAAIDETVHFVRT 280 Query: 277 RSRPYADSGLERAADDPYILRDIGNLSLRLHAAEALLEDAAALLDALPAQISFEQMAQAS 336 RSR + DSG++ A DDPY ++ +G+L+LRLHAA+ALLE A +D A+ + E +A A Sbjct: 281 RSRAWIDSGVDNAWDDPYTIQAVGDLTLRLHAAQALLEKAGLAIDKAVAEPTAETVAHAQ 340 Query: 337 VAVAEAKVLSTEVALQASEKLFELSGSAATLATHNLDRHWRNARVHTLHDPVRWKYFAVG 396 + AEAK+LSTE+A+ A+ KLFEL+G+ +TLA HNLDRHWRNAR HTLHDPVRWKY +G Sbjct: 341 IVTAEAKILSTEIAIAATNKLFELAGTRSTLAEHNLDRHWRNARTHTLHDPVRWKYSILG 400 Query: 397 NYALNGTPPPRHNWS 411 Y LNG PP H WS Sbjct: 401 KYFLNGENPPLHAWS 415