BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4635.p (382 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4147 [QK] COG3284 Transcriptional activator of acetoin/glycero... 272 1e-72 PA4021 [QK] COG3284 Transcriptional activator of acetoin/glycero... 164 2e-40 RSc3129 [QK] COG3284 Transcriptional activator of acetoin/glycer... 162 9e-40 SMb20102 [QK] COG3284 Transcriptional activator of acetoin/glyce... 150 5e-36 AGl278 [QK] COG3284 Transcriptional activator of acetoin/glycero... 136 7e-32 >PA4147 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Pae Pseudomonas aeruginosa Length = 625 Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/312 (48%), Positives = 203/312 (65%), Gaps = 5/312 (1%) Query: 8 SHLERVRRLLEGKPGGVSSPYLQRLSSSYLRSLDQHHLDPADMSGPRVLSSGQLREVQQG 67 H++ V R+L +P + S+ RS++QH LDP + GPR+LS L E ++ Sbjct: 8 DHVDCVSRVLRNAARLPQAPVPTPILDSWRRSMEQHRLDPGSLQGPRILSQTLLDECRER 67 Query: 68 EEDFLRASGQCLSMLHQTVREADYCVMLTNAGGTTIDYRVDRERRQDFKRAGLYLGSCWS 127 E FLR + + ++ LH VR+ADYCV+LT+A G TIDYRV+ R D ++AGLYLG+CWS Sbjct: 68 SELFLRIASEEVARLHGRVRDADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWS 127 Query: 128 ESEEGTCGVAAVLQDALPITVHKSDHFRAAFTTLTCSAAPIFSPAGELIGVLDASAIRSP 187 E EEGTCGVAAVL D +TVHK DHFRAAF LTCSAAP+F P GEL+GVLD SA++SP Sbjct: 128 EGEEGTCGVAAVLTDRTAVTVHKRDHFRAAFIDLTCSAAPVFDPQGELLGVLDVSAVQSP 187 Query: 188 DERDSQNLVNRIVQQSATLIEDGYFLNAMACAWVLLVHRSRHYVEAQPEILIAFDALGNI 247 D+R SQ+L+ ++V QSA IE+ +F+++ WVL HR+ YV++QP+ L A+DA G + Sbjct: 188 DDRRSQHLIRQMVAQSAREIENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDADGRL 247 Query: 248 IAANRRARECI-DGLHCLPRPLGEVFDLHFERLLDSRALQGLHLLRLHGGATLYGRVRAP 306 +A N AR + L +P +GEVFDL L + A Q LLR G L+ R+ AP Sbjct: 248 LALNPAARHYLRQRLGQVPSHIGEVFDLD---ALHAAADQAPCLLRGQAG-ELHVRLSAP 303 Query: 307 VPRAVRPARPAP 318 +A R R P Sbjct: 304 RAKARRLEREVP 315 Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 16/95 (16%) Query: 289 HLLR----LHGGATLYGRVRAPVPRAVRPARPAPVATPAQAESASAIDASARQERDQIVA 344 H+LR L GGATL A +P +R R P ASA ++ ERD ++ Sbjct: 538 HVLRYACALCGGATLQ---LADLPAELRGERRTP---------ASACESGGGPERDALLD 585 Query: 345 ALTECKWRAQHAAQLLGMSRATLYRRMARYRILPP 379 AL +W+ AA+ LG+SRATLYRR+ R+ I P Sbjct: 586 ALVRHRWKPMAAARELGISRATLYRRVRRHGIRMP 620 >PA4021 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Pae Pseudomonas aeruginosa Length = 643 Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 167/321 (52%), Gaps = 17/321 (5%) Query: 1 MPYVAKVSHLERVRRLLEGK--PGG-VSSPYLQRLSSSYLRSLDQHHLDPADMSGPRVLS 57 MP + H +V + +GK PGG + P + R S+LR L+QHHLDP P VL Sbjct: 1 MPASSMSRHARQVLTVAQGKIPPGGPATDPSIAR---SWLRCLEQHHLDPGQPMAPMVLE 57 Query: 58 SGQLREVQQGEEDFLRASGQCLSMLHQTVREADYCVMLTNAGGTTIDYRVDRERRQDFKR 117 ++ E ++ + L + + L+Q + D+ V+LT+A G ++ +RQ F+ Sbjct: 58 HARMLERRERLQQVLEIADGEMHSLYQQLSGNDHAVLLTDARGVILNCVNADAQRQTFEH 117 Query: 118 AGLYLGSCWSESEEGTCGVAAVLQDALPITVHKSDHFRAAFTTLTCSAAPIFSPAGELIG 177 AGL+LG+ WSE EGT G+ + + +T+ + +HFR+ T LTCSA+P+F P GEL+ Sbjct: 118 AGLWLGADWSEPCEGTNGIGTCVVERQALTIQQEEHFRSRHTGLTCSASPVFDPQGELMA 177 Query: 178 VLDASAIRSPDERDSQNLVNRIVQQSATLIEDGYFLNAMACAWVLLVHRSRHYVEAQPEI 237 VLD S+ R R SQ +V SA +IE YFL +W+L H YV E Sbjct: 178 VLDVSSARQEVSRQSQFHTMALVNLSAKIIEGCYFLRRFEGSWLLRFHVQGDYVGLFSEG 237 Query: 238 LIAFDALGNIIAANRRARECIDGLHC-----LPRPLGEVFDLHFERLLDSRALQ--GLHL 290 L+AF+ G I A N+ A ++ L C L +P+ FD + LL + Q Sbjct: 238 LLAFEEDGRIRAVNQSA---LNLLGCPRQRLLGQPVETFFDCRLDDLLGRASQQPSASWP 294 Query: 291 LRLHGGATLYGRVRAPVPRAV 311 LR G TLY +R PRA+ Sbjct: 295 LRTREGRTLYAMLRG-APRAI 314 >RSc3129 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Rso Ralstonia solanacearum Length = 637 Score = 162 bits (411), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 156/294 (53%), Gaps = 7/294 (2%) Query: 22 GGVSSPYLQ-RLSSSYLRSLDQHHLDPADMSGPRVLSSGQLREVQQGEEDFLRASGQCLS 80 G +S P ++ S+LR L QH LDPA+ S P VL + ++RE ++ + LR + + Sbjct: 25 GSLSGPAADPSIARSWLRCLHQHGLDPANASAPAVLEAARIRERREQLQPMLRIADGEMH 84 Query: 81 MLHQTVREADYCVMLTNAGGTTIDYRVDRERRQDFKRAGLYLGSCWSESEEGTCGVAAVL 140 LH+ + + V+LT+A G +D D R F++AGL+ G+ WSE+ EGT G+ Sbjct: 85 SLHRQLAGNGHVVVLTDADGVILDCIADHAERALFRQAGLWSGADWSEAREGTNGIGTCA 144 Query: 141 QDALPITVHKSDHFRAAFTTLTCSAAPIFSPAGELIGVLDASAIRSPDERDSQNLVNRIV 200 + +T+++ +HFR+ L+CSA+P+F P G L+ VLD S+I R Q +V Sbjct: 145 VERQALTIYQDEHFRSRHIRLSCSASPVFDPQGNLLAVLDVSSIPRELSRQGQFHTTALV 204 Query: 201 QQSATLIEDGYFLNAMACAWVLLVHRSRHYVEAQPEILIAFDALGNIIAANRRARECIDG 260 SA +IE GYFL W+L H YV E L+A G I AAN+ A + Sbjct: 205 NLSAKVIEGGYFLQHFERDWLLRFHAQPEYVGLFSEGLLAVGGDGRIRAANQSALNLLGR 264 Query: 261 LH--CLPRPLGEVFDLHFERLLDSRALQGLHL---LRLHGGATLYGRVRAPVPR 309 L +P+ VFDL + LL +RA + L H G L+G +RAP PR Sbjct: 265 TRQSLLGQPVETVFDLTADALL-ARATDSGGVAWPLHTHQGRLLFGLLRAPRPR 317 Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust. Identities = 15/29 (51%), Positives = 21/29 (72%) Query: 351 WRAQHAAQLLGMSRATLYRRMARYRILPP 379 WR HAA+ LG+SR TLYR++ ++ I P Sbjct: 607 WRMTHAAKALGISRNTLYRKLRKHGIARP 635 >SMb20102 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Sme Sinorhizobium meliloti Length = 627 Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 10/284 (3%) Query: 7 VSHLERVRRLLEGKPGGVSSPYLQRLSSSYLRSLDQHHLDPADMSGPRVLSSGQLREVQQ 66 VSH E +R + E G+ + + S+LR L+ H LDPA ++ +LRE +Q Sbjct: 2 VSHSEHIREI-ERVSRGLPVRRDETVVKSWLRCLEHHRLDPAQSCEAYIVPETRLREHRQ 60 Query: 67 GEEDFLRASGQCLSMLHQTVREADYCVMLTNAGGTTIDYRVDRERRQDFKRAGLYLGSCW 126 ED + + L L + V +Y ++L++ G T+++ D ++AGLYLGS W Sbjct: 61 QSEDLIAIARSGLENLFRQVAGQNYVLLLSDREGVTVEFLGDPLFGNSLRKAGLYLGSEW 120 Query: 127 SESEEGTCGVAAVLQDALPITVHKSDHFRAAFTTLTCSAAPIFSPAGELIGVLDASAIRS 186 SE GTC V A L+ +T+H++DHF T L+C+AAPI+ GEL VLD S + S Sbjct: 121 SEWRAGTCAVGACLETGEALTIHQTDHFDNTHTPLSCTAAPIYDIQGELSAVLDISLLSS 180 Query: 187 PDERDSQNLVNRIVQQSATLIEDGYFLNAMACAWVLLVHRSRHYVEAQPEILIAFDALGN 246 P + SQNL +V + IE + WVL RS +++ PE I+ D LG Sbjct: 181 PILKASQNLALHLVSATVRRIELANLMAQARNQWVLRFSRSPEFLDVDPEAAISIDGLGR 240 Query: 247 I---------IAANRRARECIDGLHCLPRPLGEVFDLHFERLLD 281 I I A + D + P+ FD+ + L D Sbjct: 241 IAGMTHAGAKILARSTGLDWRDPQQLIGEPVSRFFDIEVDNLSD 284 Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Query: 323 AQAESASAIDASARQERDQIVAALTECKWRAQHAAQLLGMSRATLYRRMARYRILPPHR 381 A A++ +ASA + LT C W AA+ LG+ R+T++R++ RYR L PHR Sbjct: 574 ANADTVGGNEASA-----TLSLTLTACNWNISEAARRLGLDRSTVHRQIKRYR-LKPHR 626 >AGl278 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 627 Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 4/239 (1%) Query: 9 HLERVRRLLEGKPGGVSSPYLQRLSSSYLRSLDQHHLDPADMSGPRVLSSGQLREVQQGE 68 H++ + + +G+ G + L+ S+ R LD + LDP ++S +LRE +Q Sbjct: 6 HIKEIETVGQGRNTGRDAVVLE----SWRRCLDTYQLDPTKAREAVIVSETRLREHRQQA 61 Query: 69 EDFLRASGQCLSMLHQTVREADYCVMLTNAGGTTIDYRVDRERRQDFKRAGLYLGSCWSE 128 ED L + L L++ V E +Y ++L++ G T+++ D + ++AGLYLGS WSE Sbjct: 62 EDLLHIARSGLERLYRQVAEQNYVLLLSDRQGVTVEFLGDPSFNNNLRKAGLYLGSEWSE 121 Query: 129 SEEGTCGVAAVLQDALPITVHKSDHFRAAFTTLTCSAAPIFSPAGELIGVLDASAIRSPD 188 GTC V A + +T+H++DHF T L+C+AAPI+ G L VLD S + SP Sbjct: 122 PRAGTCAVGACIATGESLTIHQTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPI 181 Query: 189 ERDSQNLVNRIVQQSATLIEDGYFLNAMACAWVLLVHRSRHYVEAQPEILIAFDALGNI 247 + SQN+ +V + IE + + VL + +++ PE ++ D G I Sbjct: 182 LKTSQNMARHLVSSTVRRIELANLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRI 240 Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 325 AESASAIDASARQERDQIVAALTECKWRAQHAAQLLGMSRATLYRRMARYRILPPH 380 A S ID+ R A L C AA+ LG+ R TL+RRM R I PH Sbjct: 576 ASSTPMIDSRGTDLR----ALLAACNGNISEAARRLGVDRTTLHRRMRRLGIGKPH 627