BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4632.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value glnP [E] COG0765 ABC-type amino acid transport system, permease ... 145 6e-35 ZglnP [E] COG0765 ABC-type amino acid transport system, permease... 145 6e-35 ECs0888 [E] COG0765 ABC-type amino acid transport system, permea... 145 6e-35 alr3187_2 [E] COG0765 ABC-type amino acid transport system, perm... 143 3e-34 sll1270_2 [E] COG0765 ABC-type amino acid transport system, perm... 142 5e-34 >glnP [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 219 Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 133/215 (61%), Gaps = 1/215 (0%) Query: 3 HWDFGSLWQFRNIIGIGFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEV 62 +D+ ++W ++ G TL +V +A GL++GLL G R + F+EV Sbjct: 2 QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV 61 Query: 63 FRCTPVLVQLVWFYYALPVLL-DIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQS 121 R TP++VQ+++ Y+ALP+ D+++ AA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++RW+ ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEVYTLVAVIYFVILLPATIWAKRLENRL 216 +R LE+++ VAV Y +I L + +RLE R+ Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRM 216 >ZglnP [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 133/215 (61%), Gaps = 1/215 (0%) Query: 3 HWDFGSLWQFRNIIGIGFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEV 62 +D+ ++W ++ G TL +V +A GL++GLL G R + F+EV Sbjct: 2 QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV 61 Query: 63 FRCTPVLVQLVWFYYALPVLL-DIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQS 121 R TP++VQ+++ Y+ALP+ D+++ AA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++RW+ ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEVYTLVAVIYFVILLPATIWAKRLENRL 216 +R LE+++ VAV Y +I L + +RLE R+ Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRM 216 >ECs0888 [E] COG0765 ABC-type amino acid transport system, permease component Ecs Escherichia coli O157:H7 Length = 219 Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 133/215 (61%), Gaps = 1/215 (0%) Query: 3 HWDFGSLWQFRNIIGIGFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEV 62 +D+ ++W ++ G TL +V +A GL++GLL G R + F+EV Sbjct: 2 QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV 61 Query: 63 FRCTPVLVQLVWFYYALPVLL-DIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQS 121 R TP++VQ+++ Y+ALP+ D+++ AA++++ + GA+ +EI RG ++SI G Sbjct: 62 IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR 121 Query: 122 EAGWALGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EAG ALG++RW+ ++ VILP A +RM PPL NQ I+ +K+TSL V+ V +L QGQ I Sbjct: 122 EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII 181 Query: 182 HETYRPLEVYTLVAVIYFVILLPATIWAKRLENRL 216 +R LE+++ VAV Y +I L + +RLE R+ Sbjct: 182 AGNFRALEIWSAVAVFYLIITLVLSFILRRLERRM 216 >alr3187_2 [E] COG0765 ABC-type amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 240 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 9/202 (4%) Query: 19 GFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPL--RAFVEVFRCTPVLVQLVWFY 76 G T+ T+ LGL+ G L+ L RLS F A L RA+V+ FR TP+LVQ+ Y Sbjct: 25 GALVTIQLTILSTVLGLICGTLIALTRLSQ--FTPARLFARAYVDFFRGTPLLVQIFMIY 82 Query: 77 YALPVL-----LDIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQSEAGWALGMTR 131 + +P L +A +++L++ A+ +EI+R GI SI+ GQ+EA +LG+ Sbjct: 83 FGIPALAQQLGFTFNFDRWVAGVIALSVNAAAYIAEIVRAGIQSIETGQTEAAKSLGLNP 142 Query: 132 WQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPLEVY 191 W M+ VI PQAF+RM PPL N+ I LK+TSL++V+ +L +GQ+I + YR E+Y Sbjct: 143 WLTMRLVIFPQAFRRMLPPLGNEFISLLKDTSLVAVIGFEELFRKGQLIVADNYRAFEIY 202 Query: 192 TLVAVIYFVILLPATIWAKRLE 213 VA++Y + L A+ RLE Sbjct: 203 AAVAIVYLCLTLLASQVLSRLE 224 >sll1270_2 [E] COG0765 ABC-type amino acid transport system, permease component Syn Synechocystis Length = 255 Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 6/208 (2%) Query: 12 FRNIIGIGFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEVFRCTPVLVQ 71 FRN+ G T+ T + GL+ G V + +S + R +VE FR TP+LVQ Sbjct: 32 FRNLFK-GSILTVLLTAFSVFFGLIGGTGVAIALISDIKPLQLIFRIYVEFFRGTPMLVQ 90 Query: 72 LVWFYYALPVL-----LDIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQSEAGWA 126 L Y+ LP L L I + AA+++L+L A+ +EIIRGGI SID GQ EA + Sbjct: 91 LFIIYFGLPALFKEIGLGITIDRFPAAIIALSLNVAAYLAEIIRGGIQSIDQGQWEACES 150 Query: 127 LGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYR 186 LGM+ WQ MK VI PQAF+R+ PPL N+ I +K+TSL +V+ +L +GQ+I TYR Sbjct: 151 LGMSPWQTMKEVIFPQAFRRILPPLGNEFITLIKDTSLTAVIGFQELFREGQLIVATTYR 210 Query: 187 PLEVYTLVAVIYFVILLPATIWAKRLEN 214 EVY VA++Y ++ ++ K LEN Sbjct: 211 AFEVYIAVALVYLLLTTISSFVFKWLEN 238