BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4628.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0348 [N] COG2063 Flagellar basal body L-ring protein Rso Rals... 107 3e-23 flgH [N] COG2063 Flagellar basal body L-ring protein Eco Escheri... 105 9e-23 ZflgH [N] COG2063 Flagellar basal body L-ring protein EcZ Escher... 105 9e-23 ECs1457 [N] COG2063 Flagellar basal body L-ring protein Ecs Esch... 105 9e-23 PA1083 [N] COG2063 Flagellar basal body L-ring protein Pae Pseud... 103 2e-22 >RSp0348 [N] COG2063 Flagellar basal body L-ring protein Rso Ralstonia solanacearum Length = 244 Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 13/225 (5%) Query: 6 RLASVAALAVLLSAC---SSPAPMVTGPTSVRPAYQVANVENNGAIFR-VSSAQ-----L 56 RLA++ ++L +AC P P+V GPT+ RP V NGAI++ V+S + Sbjct: 20 RLAALGTASLLAAACGMLPPPEPIVQGPTTARPPMPVMAPRQNGAIYQEVASGSGGFRGM 79 Query: 57 FEEPTTYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLFTQLYNANY 116 FE+ + VGD I I I+E+ ++S + + + R S T P G+ + L Sbjct: 80 FEDRRAHMVGDTITIVITENTAASKQTSGSVDRSGSKTTSVPTFAGMNPGVLSLL---GV 136 Query: 117 TATGNNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 +A+ N F G + +N T T+ V++VEVL N NLVV+GEK++ V +++FSGVV Sbjct: 137 SASDANKFDSKGANGATNNFTATITVTVVEVLSNGNLVVSGEKQMAVGQGTESIKFSGVV 196 Query: 177 RTRDIRG-GIVASSNVADARLEQVGGGSIADASSDNNFFRRLLTI 220 + V S+ VADAR+E G G +A+A R L++ Sbjct: 197 NPTTVNNQNTVLSTQVADARMEYRGTGYVAEAQQMGWLSRFFLSV 241 >flgH [N] COG2063 Flagellar basal body L-ring protein Eco Escherichia coli K12 Length = 232 Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 13/225 (5%) Query: 5 YRLASVAALAVLLSACSSPAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQ--------L 56 Y ++S+ L++ A P+V G TS +P V N G+IF+ SAQ L Sbjct: 9 YAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVAN-GSIFQ--SAQPINYGYQPL 65 Query: 57 FEEPTTYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLFTQLYNANY 116 FE+ N+GD + I + E++S+S ++ N SRD L GLF A+ Sbjct: 66 FEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA-RADV 124 Query: 117 TATGNNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 A+G NTF G G ++ SNT +GTL V++ +VL N NL V GEK+I +N +RFSGVV Sbjct: 125 EASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVV 184 Query: 177 RTRDIRGG-IVASSNVADARLEQVGGGSIADASSDNNFFRRLLTI 220 R I G V S+ VADAR+E VG G I +A + R L + Sbjct: 185 NPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNL 229 >ZflgH [N] COG2063 Flagellar basal body L-ring protein EcZ Escherichia coli O157:H7 EDL933 Length = 232 Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 13/225 (5%) Query: 5 YRLASVAALAVLLSACSSPAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQ--------L 56 Y ++S+ L++ A P+V G TS +P V N G+IF+ SAQ L Sbjct: 9 YAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVAN-GSIFQ--SAQPINYGYQPL 65 Query: 57 FEEPTTYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLFTQLYNANY 116 FE+ N+GD + I + E++S+S ++ N SRD L GLF A+ Sbjct: 66 FEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA-RADV 124 Query: 117 TATGNNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 A+G NTF G G ++ SNT +GTL V++ +VL N NL V GEK+I +N +RFSGVV Sbjct: 125 EASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVV 184 Query: 177 RTRDIRGG-IVASSNVADARLEQVGGGSIADASSDNNFFRRLLTI 220 R I G V S+ VADAR+E VG G I +A + R L + Sbjct: 185 NPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNL 229 >ECs1457 [N] COG2063 Flagellar basal body L-ring protein Ecs Escherichia coli O157:H7 Length = 232 Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 13/225 (5%) Query: 5 YRLASVAALAVLLSACSSPAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQ--------L 56 Y ++S+ L++ A P+V G TS +P V N G+IF+ SAQ L Sbjct: 9 YAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVAN-GSIFQ--SAQPINYGYQPL 65 Query: 57 FEEPTTYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLFTQLYNANY 116 FE+ N+GD + I + E++S+S ++ N SRD L GLF A+ Sbjct: 66 FEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA-RADV 124 Query: 117 TATGNNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 A+G NTF G G ++ SNT +GTL V++ +VL N NL V GEK+I +N +RFSGVV Sbjct: 125 EASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVV 184 Query: 177 RTRDIRGG-IVASSNVADARLEQVGGGSIADASSDNNFFRRLLTI 220 R I G V S+ VADAR+E VG G I +A + R L + Sbjct: 185 NPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNL 229 >PA1083 [N] COG2063 Flagellar basal body L-ring protein Pae Pseudomonas aeruginosa Length = 231 Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 15/227 (6%) Query: 7 LASVAALAVLLSACSSPAPMVTGP--TSVRPAYQVANVENNGAIFRVSSAQ-LFEEPTTY 63 + S+ +A L C +P P P V P + +NNGAI++ Q L+++ + Sbjct: 6 IVSLLGIATALGGCVNPPPKPNDPYYAPVLPRTPLPAAQNNGAIYQAGFEQNLYDDRKAF 65 Query: 64 NVGDIIKIDISESISSSNKAATNNSRDS-------SLTQKGPGSDAPLGGLFTQLYNANY 116 VGDII I ++E +S KA ++ +DS SL G ++ P+GG L +A Y Sbjct: 66 RVGDIITITLNEKTQASKKANSDIQKDSKTKMGLTSLFGSGMTTNNPIGGGDLSL-SAEY 124 Query: 117 TATGNNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 G+ KG + SN++TG++ V++ EVLPN L V GEK + +N +R +G+V Sbjct: 125 G--GSRDAKGDSQAGQSNSLTGSITVTVAEVLPNGILSVRGEKWMTLNTGNELVRIAGLV 182 Query: 177 RTRDI-RGGIVASSNVADARLEQVGGGSIADASSDNNFFRRLLT-IW 221 R DI V+S+ VADAR+ G G+ ADAS R L+ +W Sbjct: 183 RADDIATDNTVSSTRVADARITYSGTGAFADASQPGWLDRFFLSPLW 229