BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4616.p (226 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2030 [O] COG0830 Urease accessory protein UreF Rso Ralstonia ... 160 2e-39 PA4892 [O] COG0830 Urease accessory protein UreF Pae Pseudomonas... 133 3e-31 alr0734 [O] COG0830 Urease accessory protein UreF Nos Nostoc sp.... 132 6e-31 ZureF.2 [O] COG0830 Urease accessory protein UreF EcZ Escherichi... 124 2e-28 ZureF [O] COG0830 Urease accessory protein UreF EcZ Escherichia ... 124 2e-28 >RSc2030 [O] COG0830 Urease accessory protein UreF Rso Ralstonia solanacearum Length = 229 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/227 (46%), Positives = 138/227 (60%), Gaps = 4/227 (1%) Query: 3 ASALLHLLQLSSPSLPIGAYSYSQGLEAAIENGRVSSEASARAWIGQALHEVVARFEAPI 62 A+ L LL L+SP+LP+GA+SYSQGLEAA+E V EASA WI + L V+A EAP+ Sbjct: 4 AAQLTALLHLASPALPVGAFSYSQGLEAAVEARHVHDEASAARWIAEGL-AVLAACEAPL 62 Query: 63 FARLVAAFEARDAAAVSLWTERFVAARDTSEFRAETIQMGYSLGKLASDLKLGDPALLAL 122 + A ++A AV+ F+A R+T E R ET QMG+SL +L + + G PA+ Sbjct: 63 WLLQYADWQAGRLDAVAERDGWFLATRETRELRLETAQMGWSLARLIAQMGWGAPAMRDA 122 Query: 123 LQAQAEVPLPTALAFATVALKVPREAAVLGMLFAWAENQVLACVKTVPLGQVAGQRILLS 182 L A+A + PTA A A VAL + + FAW ENQV A VK +PLGQ AGQRIL Sbjct: 123 LAARAAITFPTAFAAAAVALGIEARDGLTAYSFAWVENQVAAAVKAIPLGQAAGQRILFG 182 Query: 183 LQPELEQ---AAATALALPDDDLCNWAPGLSLLSMQHEVQYSRIYRS 226 L + Q AA A +L ++PGL +LS +HE QYSR++RS Sbjct: 183 LHAAVGQAAEDAARRAACHPPELSTFSPGLGVLSARHETQYSRLFRS 229 >PA4892 [O] COG0830 Urease accessory protein UreF Pae Pseudomonas aeruginosa Length = 223 Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/217 (45%), Positives = 129/217 (59%), Gaps = 1/217 (0%) Query: 10 LQLSSPSLPIGAYSYSQGLEAAIENGRVSSEASARAWIGQALHEVVARFEAPIFARLVAA 69 L+L+S LPIG YSYSQGLEAA++NG V SAR W+ L +ARFEAP+ A L+ A Sbjct: 8 LRLASSQLPIGGYSYSQGLEAALDNGWVRDAESARTWLVDQLQLNLARFEAPLLAGLLRA 67 Query: 70 FEARDAAAVSLWTERFVAARDTSEFRAETIQMGYSLGKLASDLKLGDPALLALLQAQAEV 129 D AA +ER A+R+T E E+ QMG+SL +L L D A L Q Sbjct: 68 ALIGDWAACDAASERHRASRETRELAQESRQMGFSLHQLLEALPELDAPGRAWLARQDPP 127 Query: 130 PLPTALAFATVALKVPREAAVLGMLFAWAENQVLACVKTVPLGQVAGQRILLSLQPELEQ 189 L A A A A ++ E A+ ++W ENQ+ +KT+PLGQ+A Q++ SL PEL++ Sbjct: 128 NLAAAWAMAARAWRLDAEEALSAWFWSWLENQLAVLMKTLPLGQLAAQKLASSLLPELDR 187 Query: 190 AAATALALPDDDLCNWAPGLSLLSMQHEVQYSRIYRS 226 A A AL P + A GL+L SM HE QYSR++RS Sbjct: 188 ACAEALRRPAVEGSA-AFGLALASMTHETQYSRLFRS 223 >alr0734 [O] COG0830 Urease accessory protein UreF Nos Nostoc sp. PCC 7120 Length = 206 Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 122/212 (57%), Gaps = 10/212 (4%) Query: 19 IGAYSYSQGLEAAIENGRVSSEASARAWIGQALHEVVARFEAPIFARLVAAFEARDAAAV 78 +GAYSYS+GLE +ENG ++S+++ + W+ L R EA + R A D + Sbjct: 1 MGAYSYSEGLETLVENGTITSQSTLQQWLEAELSYGAIRLEAAVMVRAYQAATMDDMETL 60 Query: 79 SLWTERFVAARDTSEFRAETIQMGYSLGKLASDLKLGDPALLALLQAQAEVPLPTALAF- 137 W AAR+T E R + QMG SL +L ++ P +L L A P A+AF Sbjct: 61 CYWNLWLSAARETQELRNSSWQMGRSLMQLLGKIQ---PEILPLANAVGN-PCNYAIAFG 116 Query: 138 -ATVALKVPREAAVLGMLFAWAENQVLACVKTVPLGQVAGQRILLSLQPELEQAAATALA 196 A+ ++ +AA+L L +WA N + A VK +PLGQ AGQ +LL LQP + A ++ Sbjct: 117 IASAHWQINIQAALLAYLHSWATNLITAGVKLIPLGQTAGQELLLQLQPLISHATVEIMS 176 Query: 197 LPDDDL--CNWAPGLSLLSMQHEVQYSRIYRS 226 L DD+L C+W GLSL SMQHE QY+R++RS Sbjct: 177 LKDDELSCCSW--GLSLASMQHETQYTRLFRS 206 >ZureF.2 [O] COG0830 Urease accessory protein UreF EcZ Escherichia coli O157:H7 EDL933 Length = 224 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 7 LHLLQLSSPSLPIGAYSYSQGLEAAIENGRVSSEASARAWIGQALHEVVARFEAPIFARL 66 L L+QL+S SLP+G YS+SQGLE A+E G V A+ W + + + P+ ARL Sbjct: 8 LRLMQLASNSLPVGGYSWSQGLEWAVEAGWVEDSAAFEHWQQLQMEQSFFAVDLPLLARL 67 Query: 67 VAAFEARDAAAVSLWTERFVAARDTSEFRAETIQMGYSLGKLASDLKLGDPALLALLQAQ 126 A EA D + WT +A R+T E R E G + +L D + PA L Q Sbjct: 68 YRACEAGDPDSAGRWTAYLLACRETRELRDEERNRGAAFTRLLVDWQPDCPAEWRKLCQQ 127 Query: 127 AEVPLPTALAFATVALKVPREAAVLGMLFAWAENQVLACVKTVPLGQVAGQRILLSLQPE 186 +++ T +A+ V ++ L + ++W E+ V+A V+ VP GQ+A Q++++ L Sbjct: 128 SQL---TGMAWLGVRWQISVSDLALSLGYSWIESAVMAGVRLVPYGQLAAQQLIMRLCAR 184 Query: 187 LEQAAATALALPDDDLCNWAPGLSLLSMQHEVQYSRIYRS 226 +ALA PD + + P S+ S +HE QYSR++RS Sbjct: 185 YAANMDSALATPDHAIGSATPLASIASARHETQYSRLFRS 224 >ZureF [O] COG0830 Urease accessory protein UreF EcZ Escherichia coli O157:H7 EDL933 Length = 224 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 7 LHLLQLSSPSLPIGAYSYSQGLEAAIENGRVSSEASARAWIGQALHEVVARFEAPIFARL 66 L L+QL+S SLP+G YS+SQGLE A+E G V A+ W + + + P+ ARL Sbjct: 8 LRLMQLASNSLPVGGYSWSQGLEWAVEAGWVEDSAAFEHWQQLQMEQSFFAVDLPLLARL 67 Query: 67 VAAFEARDAAAVSLWTERFVAARDTSEFRAETIQMGYSLGKLASDLKLGDPALLALLQAQ 126 A EA D + WT +A R+T E R E G + +L D + PA L Q Sbjct: 68 YRACEAGDPDSAGRWTAYLLACRETRELRDEERNRGAAFTRLLVDWQPDCPAEWRKLCQQ 127 Query: 127 AEVPLPTALAFATVALKVPREAAVLGMLFAWAENQVLACVKTVPLGQVAGQRILLSLQPE 186 +++ T +A+ V ++ L + ++W E+ V+A V+ VP GQ+A Q++++ L Sbjct: 128 SQL---TGMAWLGVRWQISVSDLALSLGYSWIESAVMAGVRLVPYGQLAAQQLIMRLCAR 184 Query: 187 LEQAAATALALPDDDLCNWAPGLSLLSMQHEVQYSRIYRS 226 +ALA PD + + P S+ S +HE QYSR++RS Sbjct: 185 YAANMDSALATPDHAIGSATPLASIASARHETQYSRLFRS 224