BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4608.p (376 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2039 [E] COG4177 ABC-type branched-chain amino acid transport... 449 e-126 AGc4378 [E] COG4177 ABC-type branched-chain amino acid transport... 412 e-115 PA4860 [E] COG4177 ABC-type branched-chain amino acid transport ... 405 e-113 SMb20603 [E] COG4177 ABC-type branched-chain amino acid transpor... 404 e-112 mll0759 Non COG 399 e-111 >RSc2039 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 396 Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 289/361 (80%), Gaps = 1/361 (0%) Query: 7 RPSLFNRPAWTGIVVCTIVLAL-LPICNLLFPAGSALHVSSYTVALVGKFMCYAMAALAL 65 R L +R W+ + +++ + +P+C L PAG LH+S+Y + LVGK MCYA+AALAL Sbjct: 13 RMPLLSRWGWSVLAAAALLVCVGVPVCALAVPAGHPLHLSAYALTLVGKIMCYALAALAL 72 Query: 66 DLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHESVYQSDLPDFMVFLNWKAYPWYWW 125 DLVWGY GILSLGHG+FFALGGYA GMYLMRAIG + VYQSDLPDFMVFL+WK PW+W Sbjct: 73 DLVWGYCGILSLGHGLFFALGGYAMGMYLMRAIGRDGVYQSDLPDFMVFLDWKELPWFWH 132 Query: 126 MTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFG 185 T HF ++ LLVVLVPG+LA++FG+FAFRSR+KGVY SIITQAMT+A MLLFFRN+TGFG Sbjct: 133 GTGHFAWAALLVVLVPGVLAWLFGFFAFRSRVKGVYLSIITQAMTYAAMLLFFRNETGFG 192 Query: 186 GNNGFTDFKRILGFTITAPTTKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSES 245 GNNGFTDFKRILG+ I A +T+ VL++ T L A + CR IVTSK GRV+ +RD+E+ Sbjct: 193 GNNGFTDFKRILGYPIAAVSTRTVLFVATFIALVLAFIACRAIVTSKFGRVVTAIRDAEA 252 Query: 246 RLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGR 305 R+MF GY+PL +KLFVWT SAV+CGIAGALYVPQVGIINPSEMSP NSIEM +W AVGGR Sbjct: 253 RVMFSGYSPLGYKLFVWTFSAVLCGIAGALYVPQVGIINPSEMSPGNSIEMAVWVAVGGR 312 Query: 306 GTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKRDAA 365 GTL+GPI+GAF VNG K+ TA P+ WL+ LG +F+LVTLFLP G+LGL++ R Sbjct: 313 GTLVGPIVGAFLVNGAKTVLTAWVPEYWLFVLGAVFVLVTLFLPNGVLGLLRGRSGRRVR 372 Query: 366 P 366 P Sbjct: 373 P 373 >AGc4378 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 392 Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/333 (63%), Positives = 262/333 (78%), Gaps = 1/333 (0%) Query: 28 LLPICNLLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGG 87 L+P NLL P GSA + +Y ++++GK++ YA+ ALALDLVWGY GILSLGH FFALGG Sbjct: 27 LVPASNLLLPEGSAFRIPTYIMSMLGKYLAYALLALALDLVWGYCGILSLGHAAFFALGG 86 Query: 88 YAHGMYLMRAIGHESVY-QSDLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAF 146 YA GMYLMR IG VY LPDFMVFLNWK PW+W D FWF+ L+V++VPGLLAF Sbjct: 87 YAMGMYLMRQIGTRGVYGHPVLPDFMVFLNWKELPWFWHGFDMFWFAALMVLVVPGLLAF 146 Query: 147 VFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPTT 206 VFG+FAFRSR+ GVY SIITQAMT+A +L FFRND GFGGNNG TDFK ILGF++ A T Sbjct: 147 VFGWFAFRSRVNGVYLSIITQAMTYALLLAFFRNDMGFGGNNGLTDFKDILGFSVQADGT 206 Query: 207 KAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSA 266 +A+L+ +T A+L +L++ IV SK G+VL GVRD+ESR+ F+G+ KLF + +SA Sbjct: 207 RAMLFAMTAAMLALSLLIASGIVNSKFGKVLVGVRDAESRVRFLGFRVENIKLFTFVVSA 266 Query: 267 VICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFT 326 ++ G+AGAL+VPQVGIINP E SPANSIE+V+W AVGGRGTLIGPIIGA VNG KS+FT Sbjct: 267 MMAGVAGALFVPQVGIINPGEFSPANSIEVVVWTAVGGRGTLIGPIIGALLVNGGKSYFT 326 Query: 327 AAFPDLWLYALGLIFILVTLFLPQGILGLVQKF 359 AFP+ WL+ALG +FI VTLF P+GI+G +Q + Sbjct: 327 GAFPEFWLFALGGLFIAVTLFFPKGIVGTIQHY 359 >PA4860 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 359 Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/309 (67%), Positives = 251/309 (81%), Gaps = 5/309 (1%) Query: 37 PAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMR 96 PA SALH+S+Y++ L GK +CYA+ ALALDLVWGY G+LSLGHG+FFALGGYA GMYLMR Sbjct: 39 PADSALHLSAYSLTLTGKILCYAIVALALDLVWGYAGLLSLGHGLFFALGGYAMGMYLMR 98 Query: 97 AIGHESVYQSDLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSR 156 +S LP FM FL+W PWYW T HF +++ LVVLVPG LAF FGYFAFRSR Sbjct: 99 QASGDS-----LPAFMTFLSWNELPWYWAGTQHFLWALCLVVLVPGALAFAFGYFAFRSR 153 Query: 157 IKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPTTKAVLYLVTLA 216 I+GVYFSI+TQA+TFA MLLFFRN+TGFGGNNGFTDF+ ILGF ITAP T+A L+L T+A Sbjct: 154 IRGVYFSIMTQALTFAGMLLFFRNETGFGGNNGFTDFRSILGFPITAPGTRAALFLATVA 213 Query: 217 LLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALY 276 LL +L+L + SK GRVL +RD+E+RLMF GY+P +KLFVWTLSAV+CG+AGAL+ Sbjct: 214 LLAASLLLGWRLARSKFGRVLTALRDAENRLMFCGYDPRGYKLFVWTLSAVLCGLAGALF 273 Query: 277 VPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYA 336 VPQVGIINPSEMSP NSIE +W A+GGRGTL+GP++GA VNG KSWFT AFP+ WL+ Sbjct: 274 VPQVGIINPSEMSPTNSIEAAVWVALGGRGTLLGPLLGAGVVNGAKSWFTVAFPEYWLFF 333 Query: 337 LGLIFILVT 345 LG +FI+VT Sbjct: 334 LGALFIVVT 342 >SMb20603 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 391 Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust. Identities = 224/368 (60%), Positives = 272/368 (73%), Gaps = 8/368 (2%) Query: 17 TGIVVCTIVLAL---LPICNLLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTG 73 T +V I+LAL +P NLL LHV +Y V+L GK++ YA+ ALALDLVWG+ G Sbjct: 13 TIVVAVAILLALAVIVPALNLLTAPEHPLHVPTYLVSLFGKYLTYALLALALDLVWGFCG 72 Query: 74 ILSLGHGVFFALGGYAHGMYLMRAIGHESVYQSDL-PDFMVFLNWKAYPWYWWMTDHFWF 132 ILSLGH FFALGGYA GMYLMR IG Y + L PDFMVFLNWK PW+W+ D FWF Sbjct: 73 ILSLGHAAFFALGGYAMGMYLMRQIGARGSYGNPLLPDFMVFLNWKELPWFWYGFDMFWF 132 Query: 133 SMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTD 192 + L+VVLVPGLLAFVFG+FAFRSR+ GVY SIITQAMT+A +L FFRND GFGGNNG TD Sbjct: 133 AALMVVLVPGLLAFVFGWFAFRSRVNGVYLSIITQAMTYALLLAFFRNDMGFGGNNGLTD 192 Query: 193 FKRILGFTITAPTTKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGY 252 FK ILGF I A T+A L+ + L +LV+ IV SK G+VL +RD+ESR F+GY Sbjct: 193 FKDILGFNIQADGTRAALFAASALALAVSLVVTSGIVRSKFGKVLVALRDAESRTRFLGY 252 Query: 253 NPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPI 312 KLF +T+SA++ G+AGALYVPQVGIINP E +PANSIE+VIW AVGGRGTLIGPI Sbjct: 253 RVEHMKLFAFTVSAMMAGVAGALYVPQVGIINPGEFAPANSIEVVIWTAVGGRGTLIGPI 312 Query: 313 IGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKF----KKRDAAPAE 368 +GA VNG KS FTAAFP+ WL+ALG +F+LVTLFLP+G++G Q + + AA + Sbjct: 313 VGAILVNGGKSIFTAAFPEFWLFALGGLFVLVTLFLPKGVVGTAQSYLASRRTSHAAARK 372 Query: 369 GNASKEAA 376 + S++AA Sbjct: 373 ESESEKAA 380 >mll0759 Non COG Length = 411 Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/349 (60%), Positives = 263/349 (75%), Gaps = 1/349 (0%) Query: 28 LLPICNLLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGG 87 ++P+ NL SA +V +Y VAL GK++CYA+ ALALDLVWGY GILSLGHG FFALGG Sbjct: 28 VVPLLNLAVSPTSAFYVPAYIVALTGKYLCYALLALALDLVWGYCGILSLGHGAFFALGG 87 Query: 88 YAHGMYLMRAIGHESVYQSD-LPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAF 146 YA GMYLMR IG VY + LPDFMVFLN+K PW+W+ DHFWF+ ++V+ VPGLLAF Sbjct: 88 YAMGMYLMRQIGSRGVYGNPILPDFMVFLNYKELPWFWYGFDHFWFAAIMVLAVPGLLAF 147 Query: 147 VFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPTT 206 VFG+FAFRSR+ GVY SIITQAMT+A +L FFRND GFGGNNG TDFK ILGF + A T Sbjct: 148 VFGWFAFRSRVTGVYLSIITQAMTYALLLAFFRNDMGFGGNNGLTDFKDILGFNVQADAT 207 Query: 207 KAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSA 266 ++ L+ + A+L A+ + IV SK G++L VRD+ESR F+G+ KLF +T+SA Sbjct: 208 RSALFAASAAMLALAVFITWAIVGSKYGKLLMAVRDAESRTRFLGWRAENVKLFAFTVSA 267 Query: 267 VICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFT 326 V+ GIAGALYVPQVGIINP E P+NSIE+VIWAAVGGRGT++GPIIGA VN KSWFT Sbjct: 268 VMAGIAGALYVPQVGIINPGEFEPSNSIEVVIWAAVGGRGTIVGPIIGALLVNAGKSWFT 327 Query: 327 AAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKRDAAPAEGNASKEA 375 P+LWL+ALG +F+ VTL LP+GI+G+ ++ A + ++EA Sbjct: 328 GVLPELWLFALGGLFVAVTLLLPKGIIGMWDSWRGNAKALRAASVAEEA 376