BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4598.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 217 2e-56 Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 210 3e-54 ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 210 3e-54 yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 209 5e-54 RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 208 1e-53 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 301 Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 27 WANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRL-KPIGTVGHLLG 85 W N +L +N AM+ ++++ IV A+ P+ DP+ ++ ++L +P + H G Sbjct: 26 WKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHDPYEPNVMNKLAEP--SAEHWFG 83 Query: 86 TDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNTIIMRSIDILY 145 TD GRD+F+R++ G ++L++G V+L ++G LG+V+GY G +T+IMR +D+L Sbjct: 84 TDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYGRLVDTVIMRIMDVLL 143 Query: 146 AFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDYVDAARASGAS 205 AFP +LLA+A+ LG I N + ++ I +P ARI T VR+ +Y+DA +A GAS Sbjct: 144 AFPGILLALAIISILGGSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGAS 203 Query: 206 AFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTAI 265 I+ H+L NVL PI V T I+ S++ AS LSFLGLG +PP PEWG ML+ R + Sbjct: 204 DARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYM 263 Query: 266 YTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVK 300 Y P VA PG I V ++FN+ DGLR A++ K Sbjct: 264 YDAPHVALFPGLAIVVVVLAFNIFGDGLRDALDPK 298 >Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 168/285 (58%) Query: 16 PATAMRRSRGHWANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRLK 75 P + R W R R AM AA ++LLIV AI A W+ P D + L Sbjct: 16 PLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLN 75 Query: 76 PIGTVGHLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNT 135 ++ H G D LGRD+FSR+L+G ++SL G+ V + IG+ LG++AGY G+ + Sbjct: 76 NGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDR 135 Query: 136 IIMRSIDILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDY 195 +IMR D+L+AFP +LLAIA+ LG+GI N + ++ I +P AR+ T +++ + Sbjct: 136 LIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTF 195 Query: 196 VDAARASGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWG 255 +++AR+ GAS TI+ H+L + I V+ T I S+I A+ LSFLGLG +PP PEWG Sbjct: 196 IESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWG 255 Query: 256 LMLNTLRTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVK 300 MLN R + P VA P IF+T ++FNLL DGLR A++ K Sbjct: 256 AMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK 300 >ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 303 Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 168/285 (58%) Query: 16 PATAMRRSRGHWANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRLK 75 P + R W R R AM AA ++LLIV AI A W+ P D + L Sbjct: 16 PLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLN 75 Query: 76 PIGTVGHLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNT 135 ++ H G D LGRD+FSR+L+G ++SL G+ V + IG+ LG++AGY G+ + Sbjct: 76 NGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDR 135 Query: 136 IIMRSIDILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDY 195 +IMR D+L+AFP +LLAIA+ LG+GI N + ++ I +P AR+ T +++ + Sbjct: 136 LIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTF 195 Query: 196 VDAARASGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWG 255 +++AR+ GAS TI+ H+L + I V+ T I S+I A+ LSFLGLG +PP PEWG Sbjct: 196 IESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWG 255 Query: 256 LMLNTLRTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVK 300 MLN R + P VA P IF+T ++FNLL DGLR A++ K Sbjct: 256 AMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK 300 >yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 303 Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/285 (40%), Positives = 168/285 (58%) Query: 16 PATAMRRSRGHWANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRLK 75 P + R W R R AM AA ++LLIV AI A W+ P D + L Sbjct: 16 PLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLN 75 Query: 76 PIGTVGHLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNT 135 ++ H G D LGRD+FSR+L+G ++SL G+ V + IG+ LG++AGY G+ + Sbjct: 76 NGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDR 135 Query: 136 IIMRSIDILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDY 195 +IMR D+L+AFP +LLAIA+ LG+GI N + ++ I +P AR+ T +++ + Sbjct: 136 LIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTF 195 Query: 196 VDAARASGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWG 255 +++AR+ GAS T++ H+L + I V+ T I S+I A+ LSFLGLG +PP PEWG Sbjct: 196 IESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWG 255 Query: 256 LMLNTLRTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVK 300 MLN R + P VA P IF+T ++FNLL DGLR A++ K Sbjct: 256 AMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK 300 >RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 299 Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 168/285 (58%) Query: 16 PATAMRRSRGHWANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRLK 75 P A R W+ + + A+ A ++ L+VAAI AP ++P DP + L Sbjct: 11 PQAASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVAAILAPHLVPFDPENYFDYDALN 70 Query: 76 PIGTVGHLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNT 135 + H G D LGRD+FSR+L+G R+SL G V++ +IG+ LG++AGY G+ + Sbjct: 71 AGPSAAHWFGVDSLGRDIFSRILMGTRISLEAGFVSVVIGALIGTVLGLLAGYYEGWWDR 130 Query: 136 IIMRSIDILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDY 195 I+MR D+L+AFP +LLAI + LG G+ N + ++ + VP AR+ T ++ Y Sbjct: 131 IVMRICDVLFAFPGILLAIGIVAILGNGMANVIFAVAVFSVPAFARLVRGNTLMLKHLTY 190 Query: 196 VDAARASGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWG 255 V+AAR+ GAS TI+ H+L + I VY + I S+I A+ LSFLGLG +PP PEWG Sbjct: 191 VEAARSIGASDRTILLRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPTPEWG 250 Query: 256 LMLNTLRTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVK 300 MLN R + T P VA P IF+T ++FNLL DGLR A++ K Sbjct: 251 AMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPK 295