BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4597.p (363 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0057 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 320 5e-87 BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 318 1e-86 BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 317 2e-86 AGl2779 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 310 5e-84 DR1567 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 305 1e-82 >TM0057 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Tma Thermotoga maritima Length = 338 Score = 320 bits (819), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 164/326 (50%), Positives = 222/326 (68%), Gaps = 15/326 (4%) Query: 22 LLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARV 81 LL V+ L K+FPL + + + VRAVD VSFDI +GETL +VGESGCGK+TTA+ Sbjct: 3 LLEVKGLKKYFPLTKG---FFKKVVGYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKS 59 Query: 82 LMQLIKQDSGELVF--DGQTVGSRAMP---LRQFRRQAQMVFQDSYSSLNPRMTIEDSIA 136 +++ I G+++ DG+ V + L+ +RR QM+FQ+ Y+SLNPRM +++ + Sbjct: 60 ILRAIDPTDGDVILHLDGKDVNIAKLSRDELKPYRRYMQMIFQNPYTSLNPRMKVKEIVG 119 Query: 137 FAPIVHGL-PAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEPRL 195 +V+G+ +E R LL VGL+PE + RYPH SGGQRQR+ IARA+AL P+L Sbjct: 120 EPLLVNGIAKGKELEDRVAELLKAVGLRPE-YMIRYPHAFSGGQRQRIVIARAIALRPKL 178 Query: 196 VILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVE 255 V+ DE SALD S+ AQ+LNLL+DL++EF LTYLFI+HDL+VV ISDRV VMYLG++VE Sbjct: 179 VVCDEPTSALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKIVE 238 Query: 256 VGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTRCQFA 315 + E++F+ P+HPYT LLRS+P DP R E P+ G+ PNP NPP GC FH RC +A Sbjct: 239 LSSTEEIFENPKHPYTETLLRSVPKPDPDLREELVPIEGEVPNPANPPSGCYFHPRCPYA 298 Query: 316 QPVCQQRAPAF----TEALPLHGVAC 337 + +C++ P F TE P H VAC Sbjct: 299 KSICKEEYPEFRNLGTEDNP-HYVAC 323 >BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Bsu Bacillus subtilis Length = 329 Score = 318 bits (815), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 166/327 (50%), Positives = 221/327 (67%), Gaps = 9/327 (2%) Query: 19 RQPLLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTT 78 ++ +L +R + K+FP++ GL + V+AVDGVSF + KGETLG+VGESGCGKST Sbjct: 6 QETILELRDVKKYFPIRS-GL--FQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTA 62 Query: 79 ARVLMQLIKQDSGELVFDGQTVG--SRAMPLRQFRRQAQMVFQDSYSSLNPRMTIEDSIA 136 R +++L K G+++F GQ + S + R+ QMVFQD ++SLNPR T+ I Sbjct: 63 GRTMIRLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIK 122 Query: 137 FAPIVHGL-PAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEPRL 195 H + RE + LLARVGL P FAGRYPHE SGGQRQR+ IARAL L P L Sbjct: 123 EPFNTHNMYTMRERNEKVEELLARVGLHPS-FAGRYPHEFSGGQRQRIGIARALTLNPEL 181 Query: 196 VILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVE 255 +I DE VSALD S++ QV+NL+ +L++EF LTYLFISHDL+VVR ISDRV VMYLG+++E Sbjct: 182 IIADEPVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMME 241 Query: 256 VGPAEQVFDAPRHPYTRALLRSMPSMDP--TRRTEQAPLAGDPPNPINPPPGCRFHTRCQ 313 + +++D P HPYT+ALL S+P + + E+ L G+ P+P NPP GC FHTRC Sbjct: 242 LTGKHELYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCP 301 Query: 314 FAQPVCQQRAPAFTEALPLHGVACLRY 340 A+P+C+++ P F EA P H VAC Y Sbjct: 302 VAKPICKEQIPEFKEAAPSHFVACHLY 328 >BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Bha Bacillus halodurans Length = 322 Score = 317 bits (813), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 164/324 (50%), Positives = 217/324 (66%), Gaps = 6/324 (1%) Query: 20 QPLLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTA 79 +PLL V+ L K F + + VRAVD +SF + +GE LG+VGESGCGKSTT Sbjct: 3 KPLLEVKNLTKSFDINGG---FFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTG 59 Query: 80 RVLMQLIKQDSGELVFDGQTVGSRAM-PLRQFRRQAQMVFQDSYSSLNPRMTIEDSIAFA 138 + +++LI+ SGE+ F G + + + +R+ RR Q++FQD Y+SLNPR TIE I Sbjct: 60 KAILRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREP 119 Query: 139 PIVHGL-PAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEPRLVI 197 IVH + +E + R LL VGL + A RYPH+ SGGQRQR+ IARALA+ P+LVI Sbjct: 120 LIVHQIGTKKEQLERVEELLETVGLSSDH-ATRYPHQFSGGQRQRIGIARALAVHPKLVI 178 Query: 198 LDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVG 257 DE VSALD SV++Q+LNL+ DLK+ F LTY+FI+HDL+VV+ ISDRV VMYLG++VE+ Sbjct: 179 CDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMA 238 Query: 258 PAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTRCQFAQP 317 +Q+F+ P+HPYTRALL ++P DP E+ L GD P+P NPP GC FHTRC Sbjct: 239 TKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMD 298 Query: 318 VCQQRAPAFTEALPLHGVACLRYE 341 VC+ + P+ E H VAC YE Sbjct: 299 VCKIKRPSLHEKEKGHYVACHLYE 322 >AGl2779 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 311 Score = 310 bits (793), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 220/322 (68%), Gaps = 23/322 (7%) Query: 22 LLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARV 81 LL V L H+ G VRAVD VS DI GET+ +VGESGCGKS+ + Sbjct: 3 LLSVHSLSTHYT----------GGRGTVRAVDDVSLDIEAGETVALVGESGCGKSSLGKS 52 Query: 82 LMQLIKQDSGELVFDGQTVGS-RAMPLRQFRRQAQMVFQDSYSSLNPRMTIEDSIAFAPI 140 LM+L++ SG + F G V + + LR RR+ QM+FQD ++SLNPR T+ +I AP+ Sbjct: 53 LMRLVEPSSGRITFKGADVTAMTSSQLRGIRRRIQMIFQDPFASLNPRQTVR-TILTAPL 111 Query: 141 -VHGLPAREAIARAR----SLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEPRL 195 VHG+ R AR R +++A+VGL P+ RYPHE SGGQRQR+ IARAL LEP L Sbjct: 112 KVHGIGDR---ARQREIVEAIVAQVGLPPDAL-DRYPHEFSGGQRQRIGIARALVLEPEL 167 Query: 196 VILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVE 255 V+ DE VSALD S++AQ+LNLL+++K+ L+YLF+SHDL+VVR+ SDRVLVMYLG++VE Sbjct: 168 VVCDEPVSALDLSIQAQILNLLVEMKKRLSLSYLFVSHDLSVVRYFSDRVLVMYLGKIVE 227 Query: 256 VGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTRCQFA 315 P +++ +P+HPYTRALL ++P DP RR + AP++GD P+P +PP GCRFHTRC A Sbjct: 228 SAPTAELWASPKHPYTRALLAAVP--DPARRKQAAPISGDLPSPHDPPAGCRFHTRCPLA 285 Query: 316 QPVCQQRAPAFTEALPLHGVAC 337 +C+++AP + H VAC Sbjct: 286 TDLCREKAPDYALFGKNHAVAC 307 >DR1567 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Dra Deinococcus radiodurans Length = 346 Score = 305 bits (781), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/320 (48%), Positives = 219/320 (68%), Gaps = 6/320 (1%) Query: 22 LLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARV 81 LL V L K+FP++ G R AN V+AV+ ++F + KGE +G++GESG GK+T R Sbjct: 27 LLEVNNLQKYFPIR--GGLMSRVVAN-VKAVNDITFRVGKGEVVGLIGESGSGKTTAGRA 83 Query: 82 LMQLIKQDSGELVFDGQTVGSRAMP-LRQFRRQAQMVFQDSYSSLNPRMTIEDSIAFAPI 140 L++LI+ G+++F+G + +R +RR+ Q++FQD ++SLNPRMT+ D + A Sbjct: 84 LLRLIEPTGGQVIFNGTDITKLGKSQMRDYRREMQIIFQDPFASLNPRMTVSDILGEAMQ 143 Query: 141 VHGL-PAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEPRLVILD 199 +H L P + + R LL RVGL+PE GRYPHE SGGQRQR+ IARALA++P ++ D Sbjct: 144 IHNLHPGKARVDRIAELLQRVGLRPEHM-GRYPHEFSGGQRQRIGIARALAVDPSFIVAD 202 Query: 200 EAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPA 259 E VSALD S++AQV+NL+ DL++E GLT LFI+HDL+VV +I DR++VMYLG+++E+ P+ Sbjct: 203 EPVSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIAPS 262 Query: 260 EQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTRCQFAQPVC 319 ++ P+HPYT ALL + P DPT + ++ L GD P+PINPP GC F TRC++A C Sbjct: 263 RELNRNPKHPYTEALLSASPVPDPTIKRQRIILEGDIPSPINPPSGCVFRTRCRYAIADC 322 Query: 320 QQRAPAFTEALPLHGVACLR 339 P E P H AC+R Sbjct: 323 ANIVPELREVSPDHFKACIR 342