BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4593.p (298 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0570 [R] COG2962 Predicted permeases Rso Ralstonia solanacearum 276 4e-74 PA0485 [R] COG2962 Predicted permeases Pae Pseudomonas aeruginosa 215 1e-55 VC0195 [R] COG2962 Predicted permeases Vch Vibrio cholerae 201 2e-51 STM3955 [R] COG2962 Predicted permeases Sty Salmonella typhimuri... 197 2e-50 ZrarD [R] COG2962 Predicted permeases EcZ Escherichia coli O157:... 195 9e-50 >RSc0570 [R] COG2962 Predicted permeases Rso Ralstonia solanacearum Length = 298 Score = 276 bits (706), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 153/285 (53%), Positives = 201/285 (70%), Gaps = 1/285 (0%) Query: 3 YAVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQPL 62 +A A +WGLFPLYFKLLK V +I+ R+ WS ++ VLA +R W W+ L +QP Sbjct: 11 FAFLAYTMWGLFPLYFKLLKAVTPLEILSHRVIWSLAVMVVVLAVKRHWAWLWALRRQPR 70 Query: 63 VVGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQWL 122 VVG L +L+ NW Y+WAVN ++D SLGYF++PL+ V + L+L E++RP QW Sbjct: 71 VVGRHLACTGMLALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVLGERLRPGQWF 130 Query: 123 AVFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPLVL 182 A+ LA+ V+WLT G LPWI+L++A TF YGLLRKT+ LGALEGL+LETLL+ PL L Sbjct: 131 ALALAVAGVVWLTWQAGHLPWIALVLATTFGLYGLLRKTSPLGALEGLALETLLLFPLAL 190 Query: 183 VILGTDSLRDSNAFTHASTTARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYISPT 242 LG + + N F A ++LL+L+GP+TAVPLLLF GARRIPLS+LGL+QY+SPT Sbjct: 191 AYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSLLGLLQYVSPT 250 Query: 243 IQLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGLWRYLRSRA 287 +QLL GV +Y+EPF G + +G+ +IW L VYSAEG W LR RA Sbjct: 251 LQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEG-WLRLRRRA 294 >PA0485 [R] COG2962 Predicted permeases Pae Pseudomonas aeruginosa Length = 298 Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 129/286 (45%), Positives = 181/286 (63%), Gaps = 5/286 (1%) Query: 5 VCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQPLVV 64 + A ++WGLFPLYFKLL+ +P+ +I+VQR WS +F +L + + W EL + P Sbjct: 14 LTAYVIWGLFPLYFKLLERIPAVEIIVQRAVWSALFGAVLLLFWKHPGWWRELRQNPQRF 73 Query: 65 GGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQWLAV 124 S LL++ NW YVWAVN G +++ SLGY+++PL++V +G L+LKE++RPLQWLAV Sbjct: 74 VVLAASGLLIASNWMTYVWAVNNGHMLEASLGYYINPLINVMLGMLLLKERLRPLQWLAV 133 Query: 125 FLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLET--LLMLPLVL 182 LA V GSLPW+SL++ALTF FYGL+RK A + AL GL +ET LL L LV Sbjct: 134 ALASLGVAQQVWQLGSLPWVSLVLALTFGFYGLIRKKAPVAALPGLVVETWLLLPLALVW 193 Query: 183 VILGTDSLRDSNAFTHASTTARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYISPT 242 ++ D AF ST + ++ +GP+T VPL+ F AR +P + LG +QY++PT Sbjct: 194 LLFFADGPTSETAFW--STPEALWVVAAGPVTLVPLVCFNAAARHLPYATLGFLQYLAPT 251 Query: 243 IQLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGLWRYLRSRAQ 288 + LL +L++ E +R F IW ALAVYS + WR LR Q Sbjct: 252 LVLLQAILLFGEHLDSSRLTAFAFIWLALAVYSFDA-WRSLRRLPQ 296 >VC0195 [R] COG2962 Predicted permeases Vch Vibrio cholerae Length = 302 Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/278 (41%), Positives = 168/278 (60%), Gaps = 4/278 (1%) Query: 4 AVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQPLV 63 A+ A +WG+ P+YFK L V + +I+ R+ WS V L ++ R+WR +V + P Sbjct: 17 AISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRK 76 Query: 64 VGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQWLA 123 L++ALL+ GNW +++W++NA ++D SLGY+++PL++V +G L L E++R LQW A Sbjct: 77 FWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFA 136 Query: 124 VFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPLVLV 183 V LA V + GS+P +++ +A +F FYGLLRK + A GL LETL MLP + Sbjct: 137 VALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAI 196 Query: 184 ILGTDSLRDSNAFTHASTT--ARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYISP 241 L L D+ A T +LL+ +G +T +PLL F A R+ LS LG QYI P Sbjct: 197 YL--IWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAARLKLSTLGFFQYIGP 254 Query: 242 TIQLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGL 279 ++ L VLVY E F +AI F IW+AL ++S +GL Sbjct: 255 SLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGL 292 >STM3955 [R] COG2962 Predicted permeases Sty Salmonella typhimurium LT2 Length = 294 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/277 (39%), Positives = 169/277 (61%) Query: 4 AVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQPLV 63 A+ A +WG+ P YFKL+ VP+ +I+ R+ WS F++A+L+ RQWR + L K P Sbjct: 13 ALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQWRQVKRLLKTPKK 72 Query: 64 VGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQWLA 123 + LSA+L+ GNW L++WAVN +++ SLGYF++PL+++ +G + L E+ R +QWLA Sbjct: 73 IFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRMQWLA 132 Query: 124 VFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPLVLV 183 V LA+ VL GSLP I+L +A +FAFYGL+RK + A G+ +ETL +LP+ + Sbjct: 133 VILAVCGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLVETLWLLPVAAI 192 Query: 184 ILGTDSLRDSNAFTHASTTARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYISPTI 243 L + ++ + + +LL+ +G +T +PLL F A R+ LS LG QYI PT+ Sbjct: 193 YLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLSTLGFFQYIGPTL 252 Query: 244 QLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGLW 280 L V Y E + + F IW ALA++ + ++ Sbjct: 253 MFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIY 289 >ZrarD [R] COG2962 Predicted permeases EcZ Escherichia coli O157:H7 EDL933 Length = 295 Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 168/282 (59%) Query: 4 AVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQPLV 63 A+ A +WG+ P YFKL+ VP+ +I+ R+ WS F++ +++ RQW ++ L + P Sbjct: 13 ALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQK 72 Query: 64 VGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQWLA 123 + +SA+L+ GNW L++WAVN +++ SLGYF++PL+++ +G + L E+ R +QWLA Sbjct: 73 IFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLA 132 Query: 124 VFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPLVLV 183 V LA+ VL GSLP I+L +A +FAFYGL+RK + A G+ +ET+ +LP+ + Sbjct: 133 VILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAI 192 Query: 184 ILGTDSLRDSNAFTHASTTARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYISPTI 243 L + ++ + +LLI +G +T VPLL F A R+ LS LG QYI PT+ Sbjct: 193 YLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTL 252 Query: 244 QLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGLWRYLRS 285 L V Y E + + F IW ALA++ + ++ R Sbjct: 253 MFLLAVTFYGEKPGADKMVTFTFIWVALAIFVMDAIYTQRRK 294