BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4590.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0075 [S] COG3915 Uncharacterized protein conserved in bacteri...    54   3e-07
AGl2662 Non COG                                                        50   3e-06
DR0716 [R] COG2041 Sulfite oxidase and related enzymes Dra Deino...    36   0.042
VC1933 [S] COG3915 Uncharacterized protein conserved in bacteria...    36   0.048
MTH1700 [S] COG1784 Predicted membrane protein Mth Methanothermo...    33   0.53 

>VCA0075 [S] COG3915 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 155

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 72  VFDFAAL-SALPSVEIHPTLEYDGRRHSLRGPLLSEVLRVVGAPAAIQNCALRAVDGYAV 130
           VF    L + LP+V     L +    H   G  +S++L  +     +++    A++ YA 
Sbjct: 32  VFSLQELATELPAVSFTTELPWIHGSHRFTGFKVSDLLEYLQQDH-VKSVTFMALNDYAA 90

Query: 131 LVSPADIAKYRFIVATHLDGKPIPLGGLGPLWAVYDADSIPEMAARPVSERFGQCPWGLY 190
            +S ADI  Y  IVA ++DG  + +   GP W VY+ D  P++     S  +    W + 
Sbjct: 91  NISIADIQYYEPIVAYYMDGNEMKIRHKGPFWLVYNLDQNPKLKN---SVYYTHMVWQIS 147

Query: 191 HIAVRK 196
            I + K
Sbjct: 148 QILIHK 153


>AGl2662 Non COG
          Length = 168

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 7   LRLGASLLAAPAALPVLAAERKA--AAMSGPVLLTVTGDIGNANRGPLDPALDQMMAKQK 64
           + +G  LL+A  +L  L+  +    A   G  +LT++G+I N N                
Sbjct: 1   MSVGRVLLSAFLSLMWLSCAQAGTIAKPQGKPILTISGNITNTNA--------------- 45

Query: 65  LSFDKAHVFDFAALSALPSVEIHPTLEYDGRRHSLRGPLLSEVLRVVGAPAAIQNCALRA 124
              + A  FD   L AL    +  T  +   R    G  L++++ +VGA     +    A
Sbjct: 46  ---EGAAQFDRDMLEALGMETVETTTPWHDGRVRFDGVSLAKLMDIVGAKGT--SVTAVA 100

Query: 125 VDGYAVLVSPADIAKYRFIVATHLDGKPIPLGGLGPLWAVYDADSIPEMAARPVSER 181
           ++ Y   +   D  K+  I+A  LDG  + +   GPL+ +Y  DS PE+  +    R
Sbjct: 101 LNDYVSTIPIEDFKKFNVILAIKLDGNYMTVREKGPLFVIYPYDSDPELQKQTYYSR 157


>DR0716 [R] COG2041 Sulfite oxidase and related enzymes Dra Deinococcus
           radiodurans
          Length = 198

 Score = 36.2 bits (82), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 70  AHVFDFAALSALP----SVEIHPTLEYDGRRHSLRGPLLSEVLRVVGAPAAIQNCALRAV 125
           A  F +A L ALP    + +IH    +     +  G  ++++L V+       +   R+V
Sbjct: 53  ARTFGWADLLALPQTTLTYDIHCVTHWSKLDTTWTGVRVTDLLAVLDVDPRATHVMQRSV 112

Query: 126 DGYAVLVSPADIAKYRFIVATHLDGKPIPLGGLGPL 161
            GY   +S  D A+   ++A   DG+P+     GPL
Sbjct: 113 GGYTTNLSLEDFARPENLLAHTFDGQPLAAEHGGPL 148


>VC1933 [S] COG3915 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 156

 Score = 36.2 bits (82), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 124 AVDGYAVLVSPADIAKYRFIVATHLDGKPIPLGGLGPLWAVYDADSIPEMAARPVSERF 182
           A++ Y   +  +DI KY  + A   +GKP+ +   GP+W++Y   S  E+    +  R 
Sbjct: 86  ALNKYWAEIPYSDIEKYNPVFAIQNNGKPMQIRDRGPIWSIYPLSSSGELDNEILHSRM 144


>MTH1700 [S] COG1784 Predicted membrane protein Mth Methanothermobacter
           thermautotrophicus
          Length = 397

 Score = 32.7 bits (73), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 49  RGPLDPALDQMMAKQKLSFDKAHVFDFAALSALPSVEIHPTLEYDG--RRHSLRGPLLSE 106
           + P+ P L  M            V+ F++ S LP  EI P  E+DG   R  L G L S 
Sbjct: 178 QAPISPGLGLMTLFTGFFGLSTMVYSFSSGSYLPEQEIEPFTEFDGGTARSVLAGGLASV 237

Query: 107 VL 108
           +L
Sbjct: 238 LL 239