BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4573.p         (1375 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr3045 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium...    38   0.16 
TM0556 [CE] COG0473 Isocitrate/isopropylmalate dehydrogenase Tma...    38   0.19 
AF2245m [R] COG1204 Superfamily II helicase Afu Archaeoglobus fu...    35   0.97 
TM1450 [LK] COG1197 Transcription-repair coupling factor (superf...    32   8.1  
BS_ppsB_2 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    32   9.2  

>mlr3045 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 352

 Score = 38.1 bits (87), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 169 FDTQTLTTSHIGQLLTEAERYAGPRYMAALDIATSAHRGLDFFGGTGDYASWYKETIVPQ 228
           F  + L  S I  +  +  R A   Y+AA  +    HR L FFGGT D    Y+E +   
Sbjct: 149 FAMRRLPESRIPVIAPDNHRGA---YLAAAHLIAKGHRRLAFFGGTSDLVV-YQERLGGF 204

Query: 229 KESLTELYSKKLGALDVLTASENEAATRQLLTVIENLKLLKEDVTSAIGENTAQEIEKLI 288
           +E+   L    + A DVL   E E   R  L  +E    + E  T+A+  N A     ++
Sbjct: 205 REACETL---GIAARDVLVV-EGETNRRGGLACLETALTMAEPPTAALCFNDAVAFGVML 260

Query: 289 PILKK 293
            + K+
Sbjct: 261 ALRKR 265


>TM0556 [CE] COG0473 Isocitrate/isopropylmalate dehydrogenase Tma Thermotoga
            maritima
          Length = 354

 Score = 37.7 bits (86), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 978  LIGRGLAPDFMRYQVESKISDFNLQAAGIKHENIGAWIVTETL-RMGYP---GRKKNTLT 1033
            L G G+ P+ +R  +  K+ +   +  G   E +   I  + + R G P     KK  L 
Sbjct: 6    LPGDGIGPEVVREAL--KVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLE 63

Query: 1034 ADRIIMSESGSGRGKDTYKERLGKKYYWIALHRLIGILADNVPIVCRYSESKLSPNRLWS 1093
            AD I +   G  +  D   E+  +    +AL +++ + A+  PI    S   +SP +   
Sbjct: 64   ADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKV 123

Query: 1094 VDSRKVDLTDVRDLSTGAVY 1113
            + S  VDL  VR+LS G  Y
Sbjct: 124  IGS-GVDLVTVRELSYGVYY 142


>AF2245m [R] COG1204 Superfamily II helicase Afu Archaeoglobus fulgidus
          Length = 691

 Score = 35.4 bits (80), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 357 SVQSLLLRGPAGIGKTHAIVSAAMRRFAKGGMSLISF------GDDFENGEPWEVLRSKV 410
           S ++LLL  P   GKT     A +R   KGG SL         G+ +E+ + WE +  ++
Sbjct: 39  SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRI 98

Query: 411 GL--GTHISRDELYG 423
           G+  G + SRDE  G
Sbjct: 99  GISTGDYESRDEHLG 113


>TM1450 [LK] COG1197 Transcription-repair coupling factor (superfamily II
           helicase) Tma Thermotoga maritima
          Length = 893

 Score = 32.3 bits (72), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 313 PGFRQFSAEYMVSFPAEQMDTARQFISTVVSIQKDMASIECRAGSVQSLLLRGPAGIGKT 372
           PG  +   ++  SFP  +    +Q I  V+S   D+AS           LL G AG+GKT
Sbjct: 355 PGDPELEEKFAESFPYIETPDQQQSIEEVLS---DLAS-----EKPMDRLLCGDAGVGKT 406

Query: 373 HAIVSAAMRRFAKG 386
              + AA R  A G
Sbjct: 407 EVALRAAFRAVASG 420


>BS_ppsB_2 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
            proteins Bsu Bacillus subtilis
          Length = 1510

 Score = 32.3 bits (72), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1166 RDNDREDSEWSNPYLTVDIFYRSVFVAKDISKGDLSRLERV 1206
            RD    D   SNPYL  D  YR+  +AK +S G+L  L R+
Sbjct: 806  RDELTADRFVSNPYLPGDRLYRTGDLAKRLSNGELEYLGRI 846