BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4545.p (382 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0060 [M] COG1792 Cell shape-determining protein Rso Ralstonia... 267 3e-71 PA4480 [M] COG1792 Cell shape-determining protein Pae Pseudomona... 181 2e-45 YPO3666 [M] COG1792 Cell shape-determining protein Ype Yersinia ... 171 2e-42 VC0416 [M] COG1792 Cell shape-determining protein Vch Vibrio cho... 164 2e-40 mreC [M] COG1792 Cell shape-determining protein Eco Escherichia ... 160 4e-39 >RSc0060 [M] COG1792 Cell shape-determining protein Rso Ralstonia solanacearum Length = 346 Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 140/276 (50%), Positives = 194/276 (70%) Query: 23 PPLFKQGASARVRVTVFALISVVMLVVDARMHVLGTLRQALGTALYPFQTVAMVPRDAFT 82 PPLFKQG SA R+ +++ +LV+DAR+ VLG +RQ + LYP + V ++PRD Sbjct: 6 PPLFKQGPSATARLVALIALALALLVIDARLSVLGVVRQVVSVVLYPVERVVLIPRDTAR 65 Query: 83 NSADYFSSMASLQKENHQLRQQQIVNAQLMQQERLLAAENAQLRKLLDMQQKVPVKSIVG 142 DY S L +N LR+ + AQ + L AEN LR LL+++Q V ++ Sbjct: 66 ALLDYTQSSTRLATDNRTLRESAVAQAQQSLRASQLEAENRNLRTLLNLKQHAAVSTVAA 125 Query: 143 EILYDARDPFTRKIILNRGSQQGVMPGQPVIDDVGIVGQVTRVFPFTSEVTLLTDKDQAI 202 E+LY+ARDP+T++I+++RG++ GV G PVIDD G+VGQVTRV F ++VTLLTDKDQAI Sbjct: 126 EVLYEARDPYTQRIVIDRGTRDGVRAGYPVIDDRGVVGQVTRVSLFEAQVTLLTDKDQAI 185 Query: 203 PVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASVVLV 262 PV+V+RNGLRSVA+G + GALDLRFM A+AD+Q+GD+LVTSG+DGVYP GL VA + + Sbjct: 186 PVEVVRNGLRSVAFGGARPGALDLRFMAASADLQQGDLLVTSGLDGVYPAGLPVARIAQI 245 Query: 263 ETRSADSFARIVCRPLAGIDRHRQLLILLVEQNMPP 298 E ++ +F+R++C P+AGI +R LLI+ E PP Sbjct: 246 ERKADTAFSRVICEPVAGIRSNRHLLIVKYESGFPP 281 >PA4480 [M] COG1792 Cell shape-determining protein Pae Pseudomonas aeruginosa Length = 330 Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/266 (38%), Positives = 160/266 (60%) Query: 38 VFALISVVMLVVDARMHVLGTLRQALGTALYPFQTVAMVPRDAFTNSADYFSSMASLQKE 97 + A++SV ++VVDAR L +R LG L PF +A +P A+ D FSS + L E Sbjct: 1 MLAVLSVSLMVVDARFDYLEPVRSKLGMVLTPFYGLAEMPVRAWEGVRDQFSSRSELIAE 60 Query: 98 NHQLRQQQIVNAQLMQQERLLAAENAQLRKLLDMQQKVPVKSIVGEILYDARDPFTRKII 157 N +L+ + ++ + +Q+ L +N +LR+LL+ V K +V E++ +PFT++I+ Sbjct: 61 NERLKAESLLMQRRVQKLAALTEQNVRLRELLNSAALVDDKVLVSELIGVDPNPFTQRIM 120 Query: 158 LNRGSQQGVMPGQPVIDDVGIVGQVTRVFPFTSEVTLLTDKDQAIPVQVLRNGLRSVAYG 217 +++G GV GQPV+D G++GQV V P+T+ V LLTD +IPVQV RNGLR++A G Sbjct: 121 IDKGENDGVFVGQPVLDASGLMGQVVEVMPYTARVLLLTDTTHSIPVQVNRNGLRAIAVG 180 Query: 218 RGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASVVLVETRSADSFARIVCRP 277 G L+LR++ ADI++GD+LV+SG+ +P G VA+V V S FA + P Sbjct: 181 TGNPERLELRYVADTADIKEGDLLVSSGLGQRFPAGYPVATVKEVIHDSGQPFAVVRAVP 240 Query: 278 LAGIDRHRQLLILLVEQNMPPRPEPD 303 A ++R R +L++ + P + D Sbjct: 241 TAKMNRSRYVLLVFSDSRTPEQRAND 266 >YPO3666 [M] COG1792 Cell shape-determining protein Ype Yersinia pestis Length = 331 Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 151/257 (58%), Gaps = 2/257 (0%) Query: 24 PLFKQGASARVRVTVFALISVVMLVV-DARMHVLGTLRQALGTALYPFQTVAMVPRDAFT 82 P+F +G S ++R+ FA+I+ ++LV+ D+R+ +R + TA+ PF +A PR Sbjct: 3 PIFSRGPSLQLRL-FFAIIAAIVLVIADSRLGTFVKIRTYMDTAVSPFYFLANGPRKILD 61 Query: 83 NSADYFSSMASLQKENHQLRQQQIVNAQLMQQERLLAAENAQLRKLLDMQQKVPVKSIVG 142 N +D ++ L+ EN LRQ+ ++ +Q EN +LR+LL + + +V Sbjct: 62 NVSDTLATREQLELENRALRQELLLKNTDLQLLGQFKQENNRLRELLGSPLRQDEQKMVT 121 Query: 143 EILYDARDPFTRKIILNRGSQQGVMPGQPVIDDVGIVGQVTRVFPFTSEVTLLTDKDQAI 202 +++ DP++ +++++GS GV GQPVI D G+VGQV V FTS V L+ D A+ Sbjct: 122 QVMSSGTDPYSDHVVIDKGSNSGVYEGQPVISDRGVVGQVVAVSKFTSRVLLICDASHAL 181 Query: 203 PVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASVVLV 262 P+QVLRN +R +A G G + L L +P+N DI+ GDVLVTSG+ G +P G VA V V Sbjct: 182 PIQVLRNDIRVIAAGSGCSDDLLLEHLPSNTDIRVGDVLVTSGLGGRFPEGYPVAVVSSV 241 Query: 263 ETRSADSFARIVCRPLA 279 + + ++ I RP A Sbjct: 242 KVDNQRAYTVIQARPTA 258 >VC0416 [M] COG1792 Cell shape-determining protein Vch Vibrio cholerae Length = 296 Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 149/269 (55%) Query: 22 IPPLFKQGASARVRVTVFALISVVMLVVDARMHVLGTLRQALGTALYPFQTVAMVPRDAF 81 + P+F +G S ++R+ ++S +++ D+R+ +R L + + P Q A +PR F Sbjct: 1 MKPIFGRGPSLQLRLFFAVMLSASLMLADSRLGAFSHVRFLLNSLVAPIQYAADLPRVLF 60 Query: 82 TNSADYFSSMASLQKENHQLRQQQIVNAQLMQQERLLAAENAQLRKLLDMQQKVPVKSIV 141 + D SS L++ N L+++ + + EN +LRKLL K +V Sbjct: 61 DDFYDSISSHQQLRENNQLLKREVLTLKSNLLLLEQYKEENQRLRKLLGSSFLRDEKKVV 120 Query: 142 GEILYDARDPFTRKIILNRGSQQGVMPGQPVIDDVGIVGQVTRVFPFTSEVTLLTDKDQA 201 E++ P+ ++++++G GV GQP+I++ GIVGQVT V S V LL D + A Sbjct: 121 TEVMAVDTSPYRHQVVIDKGRVDGVYEGQPIINEKGIVGQVTFVAAHNSRVLLLIDPNTA 180 Query: 202 IPVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASVVL 261 IPVQ +RN +R +A G GQT + L +P + DI+ GD+LVTSG+ GVYP G VA V Sbjct: 181 IPVQNIRNDIRVIASGNGQTDQIQLEHIPTSTDIEVGDMLVTSGLGGVYPEGYPVAIVSQ 240 Query: 262 VETRSADSFARIVCRPLAGIDRHRQLLIL 290 V+ + FA I P+ DR R LL++ Sbjct: 241 VDKDTRREFASIKADPVVEFDRLRYLLLI 269 >mreC [M] COG1792 Cell shape-determining protein Eco Escherichia coli K12 Length = 367 Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 154/258 (59%), Gaps = 2/258 (0%) Query: 24 PLFKQGASARVRVTVFALISVVMLVVDARMHVLGTLRQALGTALYPFQTVAMVPRDAFTN 83 P+F +G S ++R+ + L+++ +++ D+R+ +R + TA+ PF V+ PR+ Sbjct: 3 PIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDTAVSPFYFVSNAPRELLDG 62 Query: 84 SADYFSSMASLQKENHQLRQQQIV-NAQLMQQERLLAAENAQLRKLLDMQQKVPVKSIVG 142 + +S L+ EN LRQ+ ++ N++L+ + ENA+LR+LL + + +V Sbjct: 63 VSQTLASRDQLELENRALRQELLLKNSELLMLGQY-KQENARLRELLGSPLRQDEQKMVT 121 Query: 143 EILYDARDPFTRKIILNRGSQQGVMPGQPVIDDVGIVGQVTRVFPFTSEVTLLTDKDQAI 202 +++ DP++ ++++++GS GV GQPVI D G+VGQV V TS V L+ D A+ Sbjct: 122 QVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHAL 181 Query: 203 PVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASVVLV 262 P+QVLRN +R +A G G T L L +PAN DI+ GDVLVTSG+ G +P G VA V V Sbjct: 182 PIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSSV 241 Query: 263 ETRSADSFARIVCRPLAG 280 + + ++ I RP AG Sbjct: 242 KLDTQRAYTVIQARPTAG 259