BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4520.p         (153 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2898 Non COG                                                        149   3e-36
SMb20414 [S] COG5528 Predicted integral membrane protein Sme Sin...   140   1e-33
PA0332 [S] COG5528 Predicted integral membrane protein Pae Pseud...    48   1e-05
APE1546 Non COG                                                        32   0.37 
RC1067 Non COG                                                         32   0.42 

>CC2898 Non COG
          Length = 156

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 1   MD-YLAIKWLHIMSATFMFGTGFGTAFYMFVTNRSRNVQAIAVVTRWVVRADWWFTTPAV 59
           MD YLA K  HI+ A  + GTG G AF+M + +R+R+   +A   R VV AD+ FTT AV
Sbjct: 1   MDLYLATKAAHIIGAAVLLGTGAGIAFFMLMAHRTRDPALVAHTARIVVLADFIFTTTAV 60

Query: 60  IIQPISGFWMMHLAGYPVTAPWLAWSLALYALAGSCWLPVVWLQLRMRDMAQTAAAGASD 119
           I QPI+G  +  +AG+P+   W+A SLALY + G CWLPVVW+Q+R+R +A+ A      
Sbjct: 61  IAQPITGGALAMMAGFPLNTGWVAMSLALYVVTGLCWLPVVWIQMRLRRLAEAAVVAGEP 120

Query: 120 LPERFWRFERIWIVLGFPAFGGLVIVYWLMVHKP 153
           LP  + R  R+W VLGFPAF  ++ + WLMV KP
Sbjct: 121 LPPAYDRLFRVWFVLGFPAFAAVLAIVWLMVAKP 154


>SMb20414 [S] COG5528 Predicted integral membrane protein Sme Sinorhizobium
           meliloti
          Length = 157

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 100/153 (65%)

Query: 1   MDYLAIKWLHIMSATFMFGTGFGTAFYMFVTNRSRNVQAIAVVTRWVVRADWWFTTPAVI 60
           M Y  +K+LHI+ A+ + GTG G AF+M + +R+   + +A V R VV AD+ FT  AV+
Sbjct: 1   MLYFVLKFLHIIGASVLLGTGAGIAFFMLLAHRTGRTETVAAVARIVVIADFLFTATAVV 60

Query: 61  IQPISGFWMMHLAGYPVTAPWLAWSLALYALAGSCWLPVVWLQLRMRDMAQTAAAGASDL 120
           +QP++G  +    GY +   W+  SL LY + G+ WLPVVW+Q+ MR +A+TA+     L
Sbjct: 61  LQPVTGIALAWNVGYSLAEGWILLSLLLYVVTGAFWLPVVWMQMEMRRLAETASKAGEPL 120

Query: 121 PERFWRFERIWIVLGFPAFGGLVIVYWLMVHKP 153
           P+R+ +  R+W   GFPAFG ++ ++WLM+ +P
Sbjct: 121 PKRYHQLFRLWFAFGFPAFGAVLAIFWLMITRP 153


>PA0332 [S] COG5528 Predicted integral membrane protein Pae Pseudomonas
           aeruginosa
          Length = 155

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%)

Query: 2   DYLAIKWLHIMSATFMFGTGFGTAFYMFVTNRSRNVQAIAVVTRWVVRADWWFTTPAVII 61
            +L IK LH ++   +FG   G AFY + + R+ +   +A   + V    W     +++ 
Sbjct: 3   HFLQIKILHGVATVLLFGGLLGLAFYAWRSWRTGDAARVARGFKRVRLIGWPLLGLSLLA 62

Query: 62  QPISGFWMMHLAGYPVTAPWLAWSLALYALAGSCWLPVVWLQLRMRDMAQTAAAGASDLP 121
            P+SG+W++HLAG+P+   WL +   LY L    WL +     R++  A  A    + L 
Sbjct: 63  LPVSGWWLVHLAGWPLGQSWLLFGACLYLLGCIFWLVLAGRLARVQHQAGAAETAGAALG 122

Query: 122 ERFWRFERIWIVLGFPAFGGLVIVYWLMVHKP 153
           E+  R  ++ +V+        + V  LMV KP
Sbjct: 123 EQTLREIKVGLVMALLGAASFIAVAVLMVSKP 154


>APE1546 Non COG
          Length = 131

 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 1  MDYLAIKWLHIMSATFMFGTGFGTAFYMFVTNRSRNVQAIAVVTRWVVRADWWFTTPAVI 60
          + Y+ ++ +H+ +A    G    +   +++  R R+        R V+R   W  T  V+
Sbjct: 3  LSYMLLQLIHVFAAILWAGAILNS---LWLLARGRDSD-----LRLVLRFTGWPATLGVV 54

Query: 61 IQPISGFWMMHLAGYPVTAPWLAWSLALYAL 91
          +   SG  M HL GYP   P     + LYAL
Sbjct: 55 VAGASGLAMAHLRGYP---PLAHAKIGLYAL 82


>RC1067 Non COG
          Length = 62

 Score = 32.3 bits (72), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 51 DWWFTTPAVIIQPISGFWMMHLAGY 75
          D  FTTP VIIQP+SG  ++++  Y
Sbjct: 33 DLLFTTPTVIIQPVSGIILVNMLVY 57