BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4517.p (386 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA789 [E] COG0683 ABC-type branched-chain amino acid transport... 345 1e-94 BH0251 [E] COG0683 ABC-type branched-chain amino acid transport ... 297 4e-80 PA3364 [E] COG0683 ABC-type branched-chain amino acid transport ... 293 6e-79 slr0447 [E] COG0683 ABC-type branched-chain amino acid transport... 276 6e-74 all1951 [E] COG0683 ABC-type branched-chain amino acid transport... 272 1e-72 >AGpA789 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 385 Score = 345 bits (884), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 173/366 (47%), Positives = 237/366 (64%), Gaps = 3/366 (0%) Query: 15 DGWRIGVLFSRSGATGVTESEHFFGTALAIEEINQLGGVLGRPLIPVAYDPKGDITEYRK 74 + WR+GVLFS +G TG E F T LAIEEIN GGVLGR + PVAYDP+ Y++ Sbjct: 7 ESWRVGVLFSETGVTGAVEKTQRFATLLAIEEINAAGGVLGRAIEPVAYDPQSTPNLYKE 66 Query: 75 LVTRMLLEDEINVVFGCSRSSSRKAVLPVIERNNALLWYCSFYEGFEYSPNVIYTGAVPN 134 L ++ ED + VVFGC SS+RKA LPVIE +ALL+Y + YEGFEYS + IYTGA PN Sbjct: 67 LAMKLCDEDRVRVVFGCHMSSTRKAALPVIEARDALLFYPTLYEGFEYSRHCIYTGAAPN 126 Query: 135 QNSVQLAAYLMQNKRTRFFLVGTDYIYPRESNRLMRDMVEQHGGEVLDEIYLPLEAGRAE 194 QNSVQL +L + R FLVG++Y+YP ESNR + D+ Q GG+VLDE+Y+PL + Sbjct: 127 QNSVQLVDFLTTHYGKRVFLVGSNYVYPYESNRTISDLFLQVGGQVLDEMYVPLNLKTED 186 Query: 195 LEEILTEIRAAQPDVVFSTLVGQSARQFYQLYPGFGFDPKVTPIASLSMAEEEVRLIGPE 254 + +I+ I AAQPDV++ST+VG FY + GFD PIAS S +E +V + PE Sbjct: 187 IAKIIRHIGAAQPDVIYSTIVGDGIIPFYTAFKEAGFDAATMPIASQSTSEADVIRMRPE 246 Query: 255 ICAGHITAATYFGSLDNASNRHFVELWRKRFNDR--PTSTWSEMAYTQIHLFARALQRAG 312 + GHITAA +F SLD FV ++KR+ + PT+ +E AY Q++L+A ALQRAG Sbjct: 247 VAEGHITAAPFFASLDTPRAHAFVSAYQKRYGKQMLPTAP-AEAAYFQVYLYAAALQRAG 305 Query: 313 SLDRRKLVEATHAVSFDSPEGRISVDAENNHCALTPRIGICRSDGQFDIAWEASEPVKPD 372 + +L+ A + V +D+P+G + +D NH L PR+ + G +DI ++ S V PD Sbjct: 306 NDGLEQLLPALYEVEYDAPQGAVKIDRLTNHTHLWPRVARVNAHGGYDIVYDPSLRVAPD 365 Query: 373 PYLSTF 378 P++ + Sbjct: 366 PFMREY 371 >BH0251 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bha Bacillus halodurans Length = 419 Score = 297 bits (760), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 225/369 (60%), Gaps = 3/369 (0%) Query: 15 DGWRIGVLFSRSGATGVTESEHFFGTALAIEEINQLGGVLGRPLIPVAYDPKGDITEYRK 74 D +G+L S SG ++E+ LAIEEIN+ GGVLG+ L+P+ D + + + Sbjct: 44 DQIAVGILHSLSGTMAMSETSVRDAELLAIEEINEAGGVLGKELVPIIEDGASEPNIFAE 103 Query: 75 LVTRMLLEDEINVVFGCSRSSSRKAVLPVIERNNALLWYCSFYEGFEYSPNVIYTGAVPN 134 T++L +DE+ V+FG S+SRKA+LPV+E NN LL+Y YEG E SPN+ Y GA PN Sbjct: 104 RATKLLQQDEVAVIFGGWTSASRKAMLPVVEENNGLLFYPVQYEGMEASPNIFYAGAAPN 163 Query: 135 QNSVQLAAYLMQNKRTRFFLVGTDYIYPRESNRLMRDMVEQHGGEVLDEIYLPLEAGRAE 194 Q V +L++N+ T FFL+G+DY++PR +N +++ +E HG ++DE Y PL G + Sbjct: 164 QQIVPAVEWLLENRGTEFFLLGSDYVFPRLANAIIKAQLESHGATLVDEQYTPL--GHTD 221 Query: 195 LEEILTEIRAAQPDVVFSTLVGQSARQFYQLYPGFGFDPKVTPIASLSMAEEEVRLIGPE 254 I++ IR ++P V+F+TL G S F++ G + S+S+AEEE+R IG + Sbjct: 222 YNTIISRIRESEPTVIFNTLNGDSNVAFFKQLADAGITADDVTVMSVSVAEEEIRGIGAD 281 Query: 255 ICAGHITAATYFGSLDNASNRHFVELWRKRF-NDRPTSTWSEMAYTQIHLFARALQRAGS 313 + AGH+ + YF + D N FV + K F +DR T E Y +HL+A+A++ AG+ Sbjct: 282 VLAGHLASWNYFQTTDTPENDTFVTAYIKSFGDDRVTGDPIEAGYLMVHLWAQAVEAAGT 341 Query: 314 LDRRKLVEATHAVSFDSPEGRISVDAENNHCALTPRIGICRSDGQFDIAWEASEPVKPDP 373 D + EA + F +P G + VD +N H T RIG ++DGQF+ W + EPVKPDP Sbjct: 342 TDIEAVREAASTIEFSAPGGLVKVDGDNQHLYKTVRIGEVQADGQFEEVWNSGEPVKPDP 401 Query: 374 YLSTFGFSD 382 +L + +++ Sbjct: 402 FLEDYEWAE 410 >PA3364 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 385 Score = 293 bits (749), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 217/366 (59%), Gaps = 1/366 (0%) Query: 19 IGVLFSRSGATGVTESEHFFGTALAIEEINQLGGVLGRPLIPVAYDPKGDITEYRKLVTR 78 IG+LFS +G T E +G LA+E++N+ GGV GRP+ ++ DP GD YR Sbjct: 10 IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAED 69 Query: 79 MLLEDEINVVFGCSRSSSRKAVLPVIERNNALLWYCSFYEGFEYSPNVIYTGAVPNQNSV 138 + + + GC S +RKAV+PV+ER +ALL Y + YEGFEYSPN++Y G PNQNS Sbjct: 70 FIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSA 129 Query: 139 QLAAYLMQNKRTRFFLVGTDYIYPRESNRLMRDMVEQHGGEVLDEIYLPLEAGRAELEEI 198 LAAYL+++ R +G+DYIYPRESN +MR + QHGG VL+EIY+PL +++ Sbjct: 130 PLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDVQRA 189 Query: 199 LTEIRAAQPDVVFSTLVGQSARQFYQLYPGFGFDPKVTPIASLSMAEEEVRLIGPEICAG 258 + I A+ DVVFST+VG + Y+ D + PIASL+ +E EV + ++ G Sbjct: 190 VERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDVAEG 249 Query: 259 HITAATYFGSLDNASNRHFVELWRKRFNDRPTST-WSEMAYTQIHLFARALQRAGSLDRR 317 + A YF S+D A++R FV+ F + T T W+E AY Q L RA Q AGS Sbjct: 250 QVVVAPYFSSIDTAASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGSWRVE 309 Query: 318 KLVEATHAVSFDSPEGRISVDAENNHCALTPRIGICRSDGQFDIAWEASEPVKPDPYLST 377 + + + D+P+G + V+ +NNH L+ RI + G F + W++ EP++PDPY+ Sbjct: 310 DVQRHLYDICIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVV 369 Query: 378 FGFSDF 383 D+ Sbjct: 370 HNLDDW 375 >slr0447 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Syn Synechocystis Length = 446 Score = 276 bits (706), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 222/381 (58%), Gaps = 15/381 (3%) Query: 18 RIGVLFSRSGATGVTESEHFFGTALAIEEINQLGGVLGRPLIPVAYDPKGDITEYRKLVT 77 ++G+L S SG ++E+ LAIEEIN GGVLGRP+ + D D + + Sbjct: 57 KVGLLHSLSGTMAISETTVVEAAELAIEEINAAGGVLGRPIEAIKEDGASDWPTFAEKAA 116 Query: 78 RMLLEDEINVVFGCSRSSSRKAVLPVIERNNALLWYCSFYEGFEYSPNVIYTGAVPNQNS 137 +++ +D++ VVFGC S+SRKAVLPV E N +LWY YEG E S N+ YTGA PNQ Sbjct: 117 KLIDQDKVPVVFGCWTSASRKAVLPVFEAKNHMLWYPVQYEGQECSKNIFYTGAAPNQQI 176 Query: 138 VQLAAYLMQNKRTRFFLVGTDYIYPRESNRLMRDMVEQHGGEVLDEIYLPLEAGRAELEE 197 +L++NK +FFLVG+DY++PR +N ++++ ++ GGE L E YLPL G E+ Sbjct: 177 EPAVDWLLENKGNKFFLVGSDYVFPRTANTIIKEQLKAKGGETLGEDYLPL--GNTEVTP 234 Query: 198 ILTEIRAAQPD--VVFSTLVGQSARQFYQLYPGFGFDPKVTPIASLSMAEEEVRLIGPEI 255 I+T+IR A PD V+F+TL G S F++ G P P+ S+S+AEEEVR IG E Sbjct: 235 IITKIREALPDGGVIFNTLNGDSNVAFFKQIQAAGLTPDKYPVMSVSVAEEEVRQIGKEY 294 Query: 256 CAGHITAATYFGSLDNASNRHFVELWRKRFN-DRPTSTWSEMAYTQIHLFARALQRAGSL 314 G + YF S+D +N+ FV ++ ++ DR T+ E AY ++L+ A++ AG + Sbjct: 295 LLGQFASWNYFQSVDTPANQKFVAAFKAKYGEDRVTNDPMEAAYISVYLWKAAVEAAGDV 354 Query: 315 DR-----RKLVEATHAVSFDSPEGRISVDAENNHCALTPRIGICRSDGQFDIAWEASEPV 369 K+ A +FD+PEG +++ N+H + T RIG +GQF I W + PV Sbjct: 355 GETPEGLEKVRAAAIGKTFDAPEGMVTMQP-NHHISKTVRIGEVNDEGQFTIVWSSDGPV 413 Query: 370 KPDPY----LSTFGFSDFWLR 386 P P+ T GF+ W R Sbjct: 414 DPIPWNQFVPETKGFTCDWTR 434 >all1951 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Nos Nostoc sp. PCC 7120 Length = 438 Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 150/389 (38%), Positives = 229/389 (58%), Gaps = 13/389 (3%) Query: 6 SGDKPPRREDGW---RIGVLFSRSGATGVTESEHFFGTALAIEEINQLGGVLGRPLIPVA 62 SG+ P G +IG+L S SG ++E LAI+EIN GGVLG+ + + Sbjct: 41 SGNASPVAASGGNTIKIGILHSLSGTMSISEKSVVDAEKLAIKEINAAGGVLGKQIEAIV 100 Query: 63 YDPKGDITEYRKLVTRMLLEDEINVVFGCSRSSSRKAVLPVIERNNALLWYCSFYEGFEY 122 D + +R+ T+++ +D++ VVFGC S+SRK V PV E + +LWY YEG E Sbjct: 101 EDGASNWDTFREKATKLIDQDKVAVVFGCWTSASRKNVKPVFESKDHMLWYPVQYEGQEC 160 Query: 123 SPNVIYTGAVPNQNSVQLAAYLMQNKRTRFFLVGTDYIYPRESNRLMRDMVEQHGGEVLD 182 S N+ YTGA PNQ +L++NK FFLVG+DY++PR +N +++ +E GG+ + Sbjct: 161 SKNIFYTGAAPNQQIEPSVDWLLKNKGKEFFLVGSDYVFPRTANTIIKAQLEALGGKTVG 220 Query: 183 EIYLPLEAGRAELEEILTEIRAAQPD--VVFSTLVGQSARQFYQLYPGFGFDPKVTPIAS 240 E YLPL G E+ I+++I+ A P+ V+++TL G S F++ G G P P S Sbjct: 221 EDYLPL--GNTEVTPIISKIKQALPNGGVIYNTLNGDSNVAFFKQLKGAGLTPDKHPSMS 278 Query: 241 LSMAEEEVRLIGPEICAGHITAATYFGSLDNASNRHFVELWRKRFN-DRPTSTWSEMAYT 299 +S+AEEEV+ IG E GH A YF ++D +N+ FVE ++K + DR T+ E AY Sbjct: 279 VSIAEEEVKAIGVEYLKGHYAAWNYFQTVDTPANKKFVEAFKKEYGADRVTNDPMEAAYI 338 Query: 300 QIHLFARALQRAGSLDRRKLVEATHAVSFDSPEGRISVDAENNHCALTPRIGICRSDGQF 359 ++L+ +++++AGS D K+ A + + D+PEG+++V+ N+H + RIG R DG F Sbjct: 339 AVYLWKQSVEKAGSPDLAKVRAAAYGQTIDAPEGKVTVNT-NHHISKIVRIGEVRDDGLF 397 Query: 360 DIAWEASEPVKPDPY----LSTFGFSDFW 384 DI + PV+P P+ T GF+ W Sbjct: 398 DIIYATPAPVEPVPWNQFVKETKGFACDW 426