BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4486.p (312 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4734 [S] COG3662 Uncharacterized protein conserved in bacteria... 353 2e-97 RSp1255 [S] COG3662 Uncharacterized protein conserved in bacteri... 295 1e-79 CC2570 Non COG 139 1e-32 MT0848 [S] COG3662 Uncharacterized protein conserved in bacteria... 65 2e-10 Rv0826 [S] COG3662 Uncharacterized protein conserved in bacteria... 65 2e-10 >PA4734 [S] COG3662 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 293 Score = 353 bits (907), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 175/291 (60%), Positives = 220/291 (75%), Gaps = 2/291 (0%) Query: 21 MEFLRQRIEANVLAISR-GPGSADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALL 79 ME +R+ IE+ VL+++ G DF P GDPGLFGPD+A W+VH DF++M+ GG+ ALL Sbjct: 1 MESVRRHIESQVLSLTGLAVGGVDFESPKGDPGLFGPDAACWKVHGDFSSMMIGGIGALL 60 Query: 80 LQMLHPLPLAGVWDHSNFQADMLGRLRRTAQFIAGTTFGSRADAERLIARVKQIHLGVTG 139 LQMLHPL LAGVWDHSNF+ D+LGRLRRT QFI+ TT+G ADAERLI RV++IH V G Sbjct: 61 LQMLHPLALAGVWDHSNFRDDLLGRLRRTGQFISATTYGPLADAERLIERVRRIHESVIG 120 Query: 140 VAPDGRPYAASDPELLTWVHVAEVQCFLQGYLRYRNPSFPAVRQDQYFAEIARIAEALGA 199 PDG PY+ASDP+LLTWVHVAEV FL+ YLRY NP P QD+Y++EIA +AE LGA Sbjct: 121 QLPDGTPYSASDPDLLTWVHVAEVSSFLKSYLRYLNPDLPGSEQDRYYSEIALVAERLGA 180 Query: 200 RDVPRSRTQIADYLEAMRAQLQCDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLP 259 R VPR R QIA YLEAMR +L+CDERTR+ ++++ NAPAP+ +A+P+ LM+R G +LLP Sbjct: 181 RAVPRDRQQIAAYLEAMRPRLRCDERTREVVRILFNAPAPSTLARPFGALMLRAGAELLP 240 Query: 260 PWAQEMLGVTPRPAWRRALLQRSVLLAAQPVRWAMRNGSIHLARRRMGLPP 310 WA ML + P RR L++ SV + +RWA+RN S+H A RRMGLPP Sbjct: 241 EWAGSMLDLPFSPLQRR-LIRGSVRRSVPLLRWAVRNASMHRACRRMGLPP 290 >RSp1255 [S] COG3662 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 298 Score = 295 bits (755), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 149/278 (53%), Positives = 191/278 (68%), Gaps = 3/278 (1%) Query: 24 LRQRIEANVLAISRGPG--SADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLLQ 81 LR+RI V ++R G + D PPGDPGLFGPD+ WQVH+DF +M+ GGV+ALLLQ Sbjct: 8 LRERIVTQVRGMTRASGGLTLDIASPPGDPGLFGPDAVCWQVHADFPSMMAGGVSALLLQ 67 Query: 82 MLHPLPLAGVWDHSNFQADMLGRLRRTAQFIAGTTFGSRADAERLIARVKQIHLGVTGVA 141 LHP LAG+WDHS+F+ D+ GRL RTAQF+AGTT+GSR DA LI RVK IH V G+A Sbjct: 68 ALHPRALAGIWDHSSFRDDLQGRLGRTAQFVAGTTYGSRRDALALIERVKAIHSRVHGIA 127 Query: 142 PDGRPYAASDPELLTWVHVAEVQCFLQGYLRYRNPSFPAVRQDQYFAEIARIAEALGARD 201 PDGRPY+A+DP+LLTWVHVAE+ FL GYLRY + RQD+YF E A +A LGARD Sbjct: 128 PDGRPYSANDPDLLTWVHVAEMSSFLAGYLRYVDAHLSGDRQDRYFEETALVAMLLGARD 187 Query: 202 VPRSRTQIADYLEAMRAQLQCDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPPW 261 VP SR + YL AMRA+L +RTR ++++++ AP QP R+ + G+ LLPPW Sbjct: 188 VPTSRAAVQAYLNAMRAELVASDRTRTVVEVLMSWQAPRPSLQPAVRMFLDAGIQLLPPW 247 Query: 262 AQEMLGVTPRPAWRRALLQRSVLLAAQPVRWAMRNGSI 299 A ML + +P R A ++ A +RWA+R GS+ Sbjct: 248 ALTMLALE-QPTLRAAFTTAAMRTLAPTLRWALREGSV 284 >CC2570 Non COG Length = 299 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 114/226 (50%), Gaps = 1/226 (0%) Query: 43 DFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLLQMLHPLPLAGVWDHSNFQADML 102 D+ PPG+P L P S W+V+ + A+ GGVAA+LL+ P +GVWDHS F+AD + Sbjct: 13 DYANPPGEPALLDPGSMHWRVYKNPIALAVGGVAAVLLEFAEPRIRSGVWDHSTFKADPI 72 Query: 103 GRLRRTAQFIAGTTFGSRADAERLIARVKQIHLGVTGVAPDGRPYAASDPELLTWVHVAE 162 GR RT +G + A R+I V +H VTG P G Y A DPELL WV Sbjct: 73 GRAMRTGTAALIGVYGPASAARRVIQGVTHMHARVTGETPGGEAYTALDPELLDWVAATA 132 Query: 163 VQCFLQGYLRYRNPSFPAVRQDQYFAEIARIAEALGARDVPRSRTQIADYLEAMRAQLQC 222 V F+ Y R+ P + +++ E A +A GA P S + L+A+ + + Sbjct: 133 VYGFVTAYDRFVAP-LTEADKTRFYEEAAPVARLYGATASPGSEAEFVAMLQALAPRFEP 191 Query: 223 DERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPPWAQEMLGV 268 + L+ + + A V +P R + R V LLPP +E L + Sbjct: 192 HPIVDEFLETIASGKAAPVVPRPLHRALARAAVSLLPPMVRETLAL 237 >MT0848 [S] COG3662 Uncharacterized protein conserved in bacteria MtC Mycobacterium tuberculosis CDC1551 Length = 363 Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 8/184 (4%) Query: 54 FGPDSAAWQVHSDFTAMLTGGVAALLLQMLHPLPLAGVWDHSNFQADMLGRLRRTAQFIA 113 GPDS W+ D+ ML G A +Q +HP A V DHS F + RL R+ I Sbjct: 64 LGPDSLTWRYFGDWRGMLQGPWAG-SMQNMHPQLGAAVEDHSTFFRERWPRLLRSLYPIG 122 Query: 114 GTTF-GSRADAERLIARVKQIHLGVTGVAPDGRPYAASDPELLTWVHVAEVQCFLQGYLR 172 G F G RA + +V+ H+ + GV GR Y A +P++ W H L R Sbjct: 123 GVVFDGDRAPVTGV--QVRDYHITIKGVDGAGRRYHALNPDVFYWAHATFFVGTLHVAER 180 Query: 173 YRNPSFPAVRQDQYFAEIARIAEALG--ARDVPRSRTQIADYLEAM-RAQLQCDERTRQT 229 + A R+ Q F E + G R VP + + DY + M R L+ + R Sbjct: 181 FCGGLTEAQRR-QLFDEHVQWYRMYGMSMRPVPATWEEFQDYWDHMCRNVLENNFAARAV 239 Query: 230 LQLV 233 L L Sbjct: 240 LDLT 243 >Rv0826 [S] COG3662 Uncharacterized protein conserved in bacteria Mtu Mycobacterium tuberculosis H37Rv Length = 351 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 8/184 (4%) Query: 54 FGPDSAAWQVHSDFTAMLTGGVAALLLQMLHPLPLAGVWDHSNFQADMLGRLRRTAQFIA 113 GPDS W+ D+ ML G A +Q +HP A V DHS F + RL R+ I Sbjct: 52 LGPDSLTWRYFGDWRGMLQGPWAG-SMQNMHPQLGAAVEDHSTFFRERWPRLLRSLYPIG 110 Query: 114 GTTF-GSRADAERLIARVKQIHLGVTGVAPDGRPYAASDPELLTWVHVAEVQCFLQGYLR 172 G F G RA + +V+ H+ + GV GR Y A +P++ W H L R Sbjct: 111 GVVFDGDRAPVTGV--QVRDYHITIKGVDGAGRRYHALNPDVFYWAHATFFVGTLHVAER 168 Query: 173 YRNPSFPAVRQDQYFAEIARIAEALG--ARDVPRSRTQIADYLEAM-RAQLQCDERTRQT 229 + A R+ Q F E + G R VP + + DY + M R L+ + R Sbjct: 169 FCGGLTEAQRR-QLFDEHVQWYRMYGMSMRPVPATWEEFQDYWDHMCRNVLENNFAARAV 227 Query: 230 LQLV 233 L L Sbjct: 228 LDLT 231