BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4477.p (493 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 500 e-141 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 484 e-136 CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 434 e-121 STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhi... 397 e-110 YPO3481 [MU] COG1538 Outer membrane protein Ype Yersinia pestis 394 e-109 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust. Identities = 261/421 (61%), Positives = 318/421 (75%), Gaps = 4/421 (0%) Query: 69 QLGWRQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSA 128 ++GWR F DP LQ+VI AL NNRDLRVAVLN+EKARAQYR+ DA +P++ A+GS SA Sbjct: 56 EIGWRDVFTDPSLQRVIDLALANNRDLRVAVLNLEKARAQYRVQDAALFPTVKASGSESA 115 Query: 129 SRTPAELSSTGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHIS 188 SRTPA LS+TG VSH S T+G SAYELD FGR+++LS ALE Y VE RRS+ IS Sbjct: 116 SRTPAALSATGQPVVSHTYSATLGFSAYELDLFGRVRSLSAQALEQYLATVEARRSSQIS 175 Query: 189 LVAEVATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAA 248 LVAEVATA+LTLA+D+DLLKLAQDT +SQS TY L QRS+++GT S + L + +V+AA Sbjct: 176 LVAEVATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAA 235 Query: 249 RADVASYTSQVAQDINALRLLVGADVDAALLPTGLPD----TASVLPATPAGLPSQVLLR 304 R DV YT+QVAQD NAL LLVGADV A LLP LPD + SVL P GL S +L R Sbjct: 236 RVDVERYTAQVAQDRNALVLLVGADVPAELLPRSLPDPSAASGSVLATIPPGLASDLLQR 295 Query: 305 RPDVLAAEHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSIN 364 RPD+L AEH LK+ANA+IGAARAAFFPSI+LTA GT+S +L GLFK GSG WSF P I+ Sbjct: 296 RPDILQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGPQIS 355 Query: 365 LPIFNSGSLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATA 424 LPIF+ G+ RA+LD A +RDI +A YEKAIQTAF EV+DALA R TL ++LDAQ Sbjct: 356 LPIFDGGANRANLDIANASRDIALAQYEKAIQTAFREVSDALAQRGTLGRQLDAQQSLVD 415 Query: 425 ASEKAFRLSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWN 484 A+ +++L+ AR+K G+DSYL L +QR+LY+AQQ LI+ RL+ +N T YK LGGGW Sbjct: 416 ATSDSYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGGGWV 475 Query: 485 E 485 E Sbjct: 476 E 476 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust. Identities = 257/472 (54%), Positives = 331/472 (70%), Gaps = 7/472 (1%) Query: 14 RTAMILALTAA-LAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGW 72 R+ + LA+ A L+GC +L PDY RP APV A++ Q G+ TG AD +GW Sbjct: 3 RSFLSLAVAAVVLSGC-SLIPDYQRPEAPVAAAYPQ---GQAYGQNTGAAAVPAAD-IGW 57 Query: 73 RQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTP 132 R+FF DP+LQQ+I ALENNRDLRVA LN+E RAQYRI AD +P I GS + R P Sbjct: 58 REFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLP 117 Query: 133 AELSSTGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAE 192 +LS+TG +S Q +T+G +A+ELD FGRL++L D ALE Y + +RS +LVA Sbjct: 118 GDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVAS 177 Query: 193 VATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADV 252 VATA+LTL +D+ L+L +DT + ++++LTQRS+D+G S +DL + VE ARA + Sbjct: 178 VATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATL 237 Query: 253 ASYTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVLAAE 312 A YT VAQD NAL LL+G+ + A L P GL ++L PAGLPS +L RRPD+L AE Sbjct: 238 AQYTRLVAQDQNALVLLLGSGIPANL-PQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAE 296 Query: 313 HTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGS 372 H L +ANA IGAARAAFFPSI+LTA+ GT SR L GLF GSGSW F PSINLPIF +GS Sbjct: 297 HQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGS 356 Query: 373 LRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRL 432 LRASLD AKI +DI+VA YEKAIQTAF EVAD LA R T ++L AQ AS++ ++L Sbjct: 357 LRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQL 416 Query: 433 SEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWN 484 ++ RY+ G+D+YLT L AQR+L++AQQ LI+ RL + ++ + LYK LGGGWN Sbjct: 417 ADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWN 468 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust. Identities = 245/467 (52%), Positives = 308/467 (65%), Gaps = 11/467 (2%) Query: 17 MILALTAALAGCANLEPDYARPVAPVPASW-TQQIDGKTVVSATGKVGQSDADQLGWRQF 75 +IL + A+ C L P Y RPV PV +W T + T VSA L WRQ Sbjct: 7 LILVASTAVGAC-TLAPQYERPVLPVAQTWSTPAPEAATTVSAA---------DLDWRQV 56 Query: 76 FLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAEL 135 +DPRLQ V+ AL+ NRDLRVAVLNIEKARAQY + + +P +S S RTPA Sbjct: 57 LVDPRLQGVVDLALQQNRDLRVAVLNIEKARAQYGVQRSALFPGVSGAVSEQRGRTPAST 116 Query: 136 SSTGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVAT 195 S TG + + T+G +AYELD FGR+++L DAAL++Y +T RS +SL+AE+A Sbjct: 117 SPTGQPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSYLATEQTSRSVRVSLIAEIAN 176 Query: 196 AWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVASY 255 AWLTLA+D++ L LA+ T ++ + L ++ D G S +DL + E E ARADVA Y Sbjct: 177 AWLTLAADQERLALAKTTLATREDSLRLVRQRVDGGAGSLLDLRNAETLAETARADVAVY 236 Query: 256 TSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVLAAEHTL 315 T+QVAQD NAL LL G D+ LLP G D SVL PAGLPS VL RRPDVLAAE L Sbjct: 237 TAQVAQDRNALTLLAGGDLPVDLLPPGRLDADSVLADLPAGLPSDVLARRPDVLAAERQL 296 Query: 316 KSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSLRA 375 ++ANA+IGAARAAFFP I+LT G+AS L GLFK G+ WSF P I+LPIF G+ A Sbjct: 297 QAANANIGAARAAFFPRISLTGSAGSASTDLDGLFKSGTSIWSFTPQISLPIFAGGANVA 356 Query: 376 SLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRLSEA 435 +L+ +K RDI VA YEK +QTAF EV+DAL+VRAT+ RL AQ + TAA+ + RLS+ Sbjct: 357 NLNISKADRDIAVATYEKTVQTAFREVSDALSVRATVADRLTAQERLTAAAADSTRLSQQ 416 Query: 436 RYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGG 482 R G+DS LT L AQR+LY+AQQ LIS RL + +N +TLYK LGGG Sbjct: 417 RRDAGLDSALTLLDAQRSLYTAQQGLISARLAQATNLVTLYKTLGGG 463 >STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhimurium LT2 Length = 503 Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust. Identities = 219/477 (45%), Positives = 299/477 (62%), Gaps = 15/477 (3%) Query: 19 LALTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKV-GQSDADQLGWRQFFL 77 LA LAGC + P + RP +P + AT V G DA +GWR FF Sbjct: 35 LAFVTTLAGC-TMAPKHERPASPTAMVYPY---------ATSTVSGAPDAADIGWRDFFH 84 Query: 78 DPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAELSS 137 DP LQ++IA AL NNRDLR A LN+E ARA YRI A+ P++ + ASRTPA+LS Sbjct: 85 DPLLQELIAIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDASRTPADLSV 144 Query: 138 TGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVATAW 197 + ++ + +A+ELD +GR+++LSD AL Y ET + +SLV+EVA+AW Sbjct: 145 MDESEINRRYEAAGATTAWELDLWGRVRSLSDQALAAYMALDETYIAARMSLVSEVASAW 204 Query: 198 LTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVASYTS 257 LTL +DR+LL+L +DT +Q +Y LT + G + +DL E + +A + A+YT Sbjct: 205 LTLRADRELLRLTEDTLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAEINRAAYTR 264 Query: 258 QVAQDINALRLLVGADVDAAL---LPTGLPDTASVLPAT-PAGLPSQVLLRRPDVLAAEH 313 Q+A+D NAL LL+G + L L + T +P T P GLPS +L+RRPD+ AAE+ Sbjct: 265 QLARDRNALELLLGQPLTPELSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRRPDIRAAEY 324 Query: 314 TLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSL 373 L+ ANA IGAARAAFFP+I+LT GTAS +L GLF+PGSGSW F P I LP+F+ G+L Sbjct: 325 RLRGANARIGAARAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITLPLFHGGAL 384 Query: 374 RASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRLS 433 RA LD A + + I++A YE IQ AF +VAD LA + TL+ ++ ++ +A AS+ A+ L+ Sbjct: 385 RADLDRAHVQKQIEIARYENVIQQAFRDVADGLAGQRTLNDQVQSEQRAVEASQIAYELA 444 Query: 434 EARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWNEQTVQK 490 R++ G+D YLT L R LY AQQ L+ RL +Q N I LYK LGGGW E + +K Sbjct: 445 GLRFQEGVDDYLTLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKALGGGWREYSEKK 501 >YPO3481 [MU] COG1538 Outer membrane protein Ype Yersinia pestis Length = 468 Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/467 (48%), Positives = 306/467 (65%), Gaps = 12/467 (2%) Query: 17 MILALTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGWRQFF 76 +IL+L A LAGC +L+PDY RPVAPVPA+ S A + W++ Sbjct: 6 LILSLPALLAGCISLDPDYQRPVAPVPATLPY-----------STASSSKAADIPWQETI 54 Query: 77 LDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAELS 136 +DP+L+QVIA ALE+NRDLR A+ +IE ARAQY + A + P+++A + S R ++ S Sbjct: 55 IDPKLRQVIALALESNRDLRQAIADIEAARAQYGVQRAAQIPTVNAGVNGSRGRGLSDTS 114 Query: 137 STGLAT-VSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVAT 195 T +S +SA+ELD FG+ +LS A ETY E ++T I+L+A+ AT Sbjct: 115 DGNNNTAISQSYGAQASVSAFELDLFGKKSSLSHAEFETYLATEEAAKTTRITLIADTAT 174 Query: 196 AWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVASY 255 AW+TLA+D++ L LA++T S ++ +L Q G S +D+A++E ++ARADVA Y Sbjct: 175 AWVTLAADQNQLLLAEETLKSAEQSLKLAQLRQKNGIASRIDVAAMETLYQSARADVAQY 234 Query: 256 TSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVLAAEHTL 315 + VAQD NAL LLVG V A LLP V+ A P GL S VLL RPDVL AEH L Sbjct: 235 KTTVAQDKNALDLLVGQPVAAHLLPVTASTLPEVIKAVPVGLSSDVLLNRPDVLEAEHKL 294 Query: 316 KSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSLRA 375 KSANA+IGAARAAFFPS+TLTA GG +S L L G+G WS AP+I LPIF+ G+ RA Sbjct: 295 KSANANIGAARAAFFPSVTLTASGGVSSSALSTLLSEGAGIWSLAPAITLPIFDGGANRA 354 Query: 376 SLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRLSEA 435 +L+ ++ + +A YEKAIQTAF EVADALA +AT+ ++ AQ AA++++ L++ Sbjct: 355 ALEYSQAQKTGYIAAYEKAIQTAFKEVADALARKATIQEQRAAQQAYVAAAQESVELAQK 414 Query: 436 RYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGG 482 RYK GID+YL L AQRTLY+AQ LI+++ + +N ITLYKVLGGG Sbjct: 415 RYKQGIDTYLNMLDAQRTLYAAQTRLIAVQQIQTNNLITLYKVLGGG 461