BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4467.p (512 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 346 6e-95 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 311 3e-84 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 308 2e-83 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 307 3e-83 YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 305 2e-82 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 346 bits (888), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 221/519 (42%), Positives = 319/519 (61%), Gaps = 21/519 (4%) Query: 2 DRKIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLVR 61 D +I +L +F V+ L+ + + ++D N +I S R SL+ ++ Sbjct: 5 DMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIV-----SERYSLIALSNQIK 59 Query: 62 VRSTEFQHILGNEQTMATLE---KALAERYAEFTTLQQDYRKLD---LTKEESAAFDQLS 115 + IL N + T E K +++ A Q Y +L+ T + A F + Sbjct: 60 NNGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQF 119 Query: 116 NTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHK----- 170 + +AY RK AL ++ EA AL +GD + ++ ++ L +DH+ Sbjct: 120 DARSAYGASVRKFFALVDADNVQEARALYQGDMSR----LQDRYYVLVDKMVDHQAGEME 175 Query: 171 EEANTAADRVFDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLS 230 + + AA + + I+ L V LL +A I R ++RP+ A+ LA VA +L+ Sbjct: 176 HDVSEAAAQGANAKIQMIV-LAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLT 234 Query: 231 GQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQ 290 + V ++DE G+L+ AL HM +L +V +V I AS E+A GN DLS+RTE Q Sbjct: 235 HLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQ 294 Query: 291 ASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGS 350 ASSLEETA+AME+LTSTV+QNA++A +A+ L S ++ +A +GG VD +QTM I + S Sbjct: 295 ASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSS 354 Query: 351 ARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIK 410 +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAA+EIK Sbjct: 355 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIK 414 Query: 411 ELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVT 470 LIE SV V++G V++AG+ + ++V + V ++SEI+ +SREQS GI++IN A+T Sbjct: 415 ALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAIT 474 Query: 471 QMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 QMD+ TQ+NA+LVE++A AA +L+DQ +QLA +V+ F+L Sbjct: 475 QMDKATQENASLVEESATAAQALQDQANQLADMVSTFKL 513 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 311 bits (797), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 209/471 (44%), Positives = 289/471 (61%), Gaps = 37/471 (7%) Query: 51 ISLMLERTLVRVRSTEFQHILGNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAA 110 I M++++ + +T + + G T+ EK + ++ L +D R + AA Sbjct: 72 IRWMMDQSNIGSGATVAELMQGATNTLKLTEK----NWEQYEALPRDPR------QSEAA 121 Query: 111 FDQLSNTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAYR-AIEKQFSALRQANIDH 169 F ++ T Y ++I L +E ++Y+ A EKQ+ A Q N Sbjct: 122 FLEIKRTYDIYHGALAELIQLLGAGKINEFF----DQPTQSYQDAFEKQYMAYMQQN--- 174 Query: 170 KEEANTAADRVFD----------HSQHWIM-GLLVAGILLGLALAIAIARVVSRPLAEAL 218 DR++D + W++ +L+A +++ +A+ I + P+ + Sbjct: 175 --------DRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLI 226 Query: 219 QLARRVADNDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAH 278 + R +A DL +++V +E GQL L HM L VG+V I + + EIA Sbjct: 227 ESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAM 286 Query: 279 GNADLSARTESQASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDR 338 GN DLS+RTE QA+SLEETA++ME+LT+TV+QNAE+A QA+ L +++ AQ+GG VVD Sbjct: 287 GNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDN 346 Query: 339 VVQTMGEIRSGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSL 398 VVQTM +I S S +IADII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+L Sbjct: 347 VVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNL 406 Query: 399 AQRSAAAAREIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQ 458 AQRSA AAREIK LIE SV +V G+ LV+ AG+TM EIV++V RV +M EIA AS EQ Sbjct: 407 AQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQ 466 Query: 459 SRGIDEINHAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 SRGID++ AV +MD TQQNA+LVE++AAAA +L +Q +L VA FR+ Sbjct: 467 SRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRI 517 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 211/437 (48%), Positives = 278/437 (63%), Gaps = 8/437 (1%) Query: 79 TLEKA---LAERYAEFTTLQQDYRKLDLTKEESAAFDQLSNTLAAYLVEHRKIIALSHEN 135 TLE+A LA+ A + + YR L T +E D+ +L + + + + + Sbjct: 83 TLERARMFLAKSDASW----KRYRALPSTPDERKLADEADALRTVFLRDGAQALMQAIQA 138 Query: 136 HKDEALALTKGDSLKA-YRAIEKQFSALRQANIDHKEEANTAADRVFDHSQHWIMGLLVA 194 E + T +++ A YR + + +AL + ++ + A R D LL+ Sbjct: 139 GDAERTSQTVMEAMPALYRPLGDKVTALSRMQMEIARASYEAGQREHDGLSALTAALLLV 198 Query: 195 GILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDETGQLMLALNHMTYS 254 GI+ G L ++ R ++ PL A++ A + DL+ ++V DETG+++LAL M S Sbjct: 199 GIVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQES 258 Query: 255 LGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASAMEELTSTVRQNAEH 314 L MVG+V I +A+ +IA GNADLS RTE QASSLEETAS+ME+LT V+QNA+ Sbjct: 259 LQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADS 318 Query: 315 AHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVIDGIAFQTNILALNA 374 A QA+ L ++ +A +GG VV RVV+TM I S +IADIIGVI+GIAFQTNILALNA Sbjct: 319 ARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNA 378 Query: 375 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQVASGADLVDQAGKTM 434 AVEAARAGEQGRGFAVVA EVRSLAQRSA AA+EIK LI SV +V SG LV +AG + Sbjct: 379 AVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVI 438 Query: 435 HEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAALVEQAAAAAHSLR 494 E+V +V RV +M EI+ AS QS GI ++N AVTQMDE TQQNAALVEQAAAAA SL+ Sbjct: 439 DEVVVAVKRVTGIMGEISAASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQ 498 Query: 495 DQTDQLASLVARFRLRS 511 +Q D L VA FR R+ Sbjct: 499 EQADGLRGTVAAFRTRA 515 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 172/305 (56%), Positives = 221/305 (72%) Query: 205 AIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHR 264 + +++ PL + + +A+ DL+ + VH R+E G L +L HM L +VGEV Sbjct: 213 GMQQILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRV 272 Query: 265 SIAIINTASGEIAHGNADLSARTESQASSLEETASAMEELTSTVRQNAEHAHQANELVST 324 I + + EIA GN DLSARTE QA+SLEETA++ME+LT+TV+QNAE+A QA++L + Sbjct: 273 GADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALS 332 Query: 325 STRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 384 ++ AQ+GG VV VVQTM EI S +IADI VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 333 ASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQ 392 Query: 385 GRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARV 444 GRGFAVVA EVR+LAQRSA AA+EIK LI+ SV +V G+ LV+ AG+TM +IV++V RV Sbjct: 393 GRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRV 452 Query: 445 ATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLV 504 +M EIA AS EQSRGID+I AV +MD TQQNA+LVE++A+AA SL +Q L + Sbjct: 453 TDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAM 512 Query: 505 ARFRL 509 + F L Sbjct: 513 SVFVL 517 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 305 bits (781), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/304 (55%), Positives = 222/304 (73%) Query: 206 IARVVSRPLAEALQLARRVADNDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRS 265 + R ++ PL L +A R+A DL+ DE G LM A+ M +L M+ E+ Sbjct: 308 MTRQITVPLRATLDMAERIATGDLTAATTSSRTDELGMLMNAVARMNENLRAMIDEIRIG 367 Query: 266 IAIINTASGEIAHGNADLSARTESQASSLEETASAMEELTSTVRQNAEHAHQANELVSTS 325 ++ ++ ASGEIA GN DLS+RTE QA+++EETA++ME+L +TV+QN ++AH AN+L + + Sbjct: 368 VSQVSHASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQLATEA 427 Query: 326 TRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQG 385 ++ AQQGG +V+ VV+TM +I S RI++I VI+ IAFQTNILALNAAVEAARAGEQG Sbjct: 428 SQTAQQGGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAARAGEQG 487 Query: 386 RGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVA 445 RGFAVVA+EVR+LAQRSA AA+EI+ LI SV QV +G LV AG TM EIV SV+ V Sbjct: 488 RGFAVVASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRSVSHVR 547 Query: 446 TLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVA 505 +M+EIA AS EQSRGI +++ A+++MD TQQNAALVE++AAAA SL +Q LA VA Sbjct: 548 DIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILLAQAVA 607 Query: 506 RFRL 509 FRL Sbjct: 608 VFRL 611