BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4435.p (237 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3192 [TK] COG0745 Response regulators consisting of a CheY-lik... 223 3e-58 SMb20219 [TK] COG0745 Response regulators consisting of a CheY-l... 208 8e-54 PA4101 [TK] COG0745 Response regulators consisting of a CheY-lik... 206 4e-53 BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-... 189 5e-48 mlr2740 [TK] COG0745 Response regulators consisting of a CheY-li... 182 8e-46 >PA3192 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 242 Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/233 (50%), Positives = 154/233 (66%), Gaps = 5/233 (2%) Query: 3 RKILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTD 62 R IL+VDDDQ+ R LL+ YL + ++V GA F +E SL ILDVMLPD D Sbjct: 6 RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQAL--CEEEASLAILDVMLPDED 63 Query: 63 GFALCKAVR---RKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIH 119 GF+LC+ +R R + +P+IMLTASSDE DRV+GLELGADDY+ KP+SPRELLARIKA+ Sbjct: 64 GFSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALL 123 Query: 120 RRIGIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRN 179 RR F + LDTV L G+ L+G D+ LLK F++HP +LDR+ Sbjct: 124 RRAQFTQVRGGDVLAFEDWRLDTVSHRLFHEDGEEFFLSGADFALLKLFLDHPQQILDRD 183 Query: 180 VLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADV 232 + TRGR+ PL+R +D+ +S+LR RL D G+ P LI+TVRG+GY+ +A V Sbjct: 184 TIANATRGREVLPLERIVDMAVSRLRQRLRDTGKAPRLIQTVRGSGYLLAAQV 236 >SMb20219 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 245 Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 112/237 (47%), Positives = 154/237 (64%), Gaps = 9/237 (3%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGF 64 ILIVDDD++ R L+ AYL+KN V+ DG + + A+ + L+ILD+M+P DG Sbjct: 7 ILIVDDDREIRELVSAYLKKNGLRVTAVADGRQMRTFLE--ANTVDLIILDLMMPGDDGL 64 Query: 65 ALCKAVR--RKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 L + +R R P++MLTA SDE DR++GLE+GADDYIAKP+S RELLARIKA+ RR Sbjct: 65 VLSRELRVGRHKATPIVMLTARSDEMDRIIGLEMGADDYIAKPFSARELLARIKAVLRRA 124 Query: 123 -----GIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLD 177 + S A + RF + LDT R L D G + L+G +Y+LL+ FV+HP VL+ Sbjct: 125 RMLPANLQVSEAGQLLRFGQWKLDTTARHLIDADGTAIALSGAEYRLLRVFVDHPQRVLN 184 Query: 178 RNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSV 234 R+ L T+GR+A DRS+D+ +S++R RL D R+P I+TVR GYVFS V + Sbjct: 185 RDQLLNLTQGREAELFDRSIDLLVSRVRQRLGDDAREPTYIRTVRSEGYVFSVPVEI 241 >PA4101 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 246 Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 155/243 (63%), Gaps = 15/243 (6%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGA---AFLSEFQRVADELSLVILDVMLPDT 61 ILIVDDD++ R L+ YL+KN ++ DG AFL A+ + L++LD+M+P Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLE-----ANTVDLIVLDIMMPGD 61 Query: 62 DGFALCKAVR--RKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIH 119 DG LC+ +R + PV+MLTA +DETDR++GLE+GADDY+ KP+S RELLARI A+ Sbjct: 62 DGLLLCRELRVGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVL 121 Query: 120 RRI-----GIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGD 174 RR + S + R F + LDT R L D AG +V L+G +Y+LL+ F++HP Sbjct: 122 RRTRMLPPNLTVSESSRLIGFGQWQLDTSARHLLDDAGTVVALSGAEYRLLRVFLDHPQR 181 Query: 175 VLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSV 234 VL R+ L T+GR+A DRS+D+ +S+LR RL D R+P IKTVR GYVFS V + Sbjct: 182 VLSRDQLLNLTQGREADIFDRSIDLLVSRLRQRLGDDAREPEYIKTVRSEGYVFSLPVRL 241 Query: 235 AAA 237 A Sbjct: 242 VEA 244 >BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 238 Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 144/234 (61%), Gaps = 5/234 (2%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGF 64 ILIVDDD+ R LL +L++ VS+A +G L R + LVILDVMLP G Sbjct: 7 ILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP--IDLVILDVMLPGKSGI 64 Query: 65 ALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGI 124 +C+ VRR S VP+IMLTA +D D+++GLE+GADDYIAKP+ PRELLARI+A+ RR Sbjct: 65 EICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEG 124 Query: 125 DSS---AAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVL 181 + S A + YRFAG++LD R LT V LT ++ LL+ FV+ +L R+ L Sbjct: 125 NRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILSRDQL 184 Query: 182 CEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSVA 235 E + DRS+D+ IS+LR +L D P LI T+RG GY F +V +A Sbjct: 185 MEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEIA 238 >mlr2740 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 238 Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 141/227 (62%), Gaps = 5/227 (2%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGF 64 ILIVDDD+ R LL+ + +K S+A DG + +R ++ L++LDVMLP G Sbjct: 7 ILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRA--QVDLIVLDVMLPGKSGL 64 Query: 65 ALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGI 124 LC+ +R + + P+IMLTA ++ TDRVVGLE+GADDY+ KP+ PRELLARI+A+ RR G Sbjct: 65 ELCRDLRAQYSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRRNGA 124 Query: 125 ---DSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVL 181 + A + YRFAG+++D R LT V LT ++ LL+ FV+ VL R+ L Sbjct: 125 AEPKRATAKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQRVLTRDQL 184 Query: 182 CEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 E + G DRS+D+ +S+LR ++ D + P LI TVR GY F Sbjct: 185 IELSGGDSDYSFDRSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQF 231