BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4415.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2757 [S] COG4125 Predicted membrane protein Pae Pseudomonas ae...   160   1e-39
PA2880 [S] COG4125 Predicted membrane protein Pae Pseudomonas ae...    99   3e-21
RSp1513 [S] COG4125 Predicted membrane protein Rso Ralstonia sol...    97   1e-20
SMa1780 Non COG                                                        87   1e-17
AGc3030 [S] COG4125 Predicted membrane protein Atu Agrobacterium...    80   2e-15

>PA2757 [S] COG4125 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 147

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 99/140 (70%)

Query: 1   MQGFKRKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFE 60
           MQG KRKLVY + +E + +  +T+GL + AG   T +   AVV +T+A  WNFI+N LFE
Sbjct: 1   MQGIKRKLVYVTAYELIGMSISTLGLALLAGSTPTTTGPLAVVITTVAVTWNFIYNCLFE 60

Query: 61  RWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIY 120
            WE RQ  RGR+ ARR AHAIGF+  LVV L+PL AWW+GISL +A  LD  LIV    Y
Sbjct: 61  FWERRQAVRGRSIARRVAHAIGFQLTLVVYLIPLIAWWMGISLLEAFWLDLALIVLIPCY 120

Query: 121 TYLFNLLFDRIFGLPSSAMP 140
           T+LFN  FDR+FGLP+SA+P
Sbjct: 121 TFLFNWAFDRLFGLPTSALP 140


>PA2880 [S] COG4125 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 171

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 78/128 (60%), Gaps = 1/128 (0%)

Query: 2   QGFKRKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFER 61
           +  K ++ +A  FEGLA++ T   L++       H  A  ++ ST+A LWN +FN+LF+R
Sbjct: 25  KTLKERIFHALAFEGLAVLLTAPVLSLVMNKPLAHMGALTLMFSTVAMLWNMLFNSLFDR 84

Query: 62  WEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIYT 121
            + R   + R    R  HA+ FE GL+V+LVPL AWWL I L +A  LD GLI+FF+ YT
Sbjct: 85  AQRRMGFQ-RTLQVRVLHAMLFELGLIVVLVPLAAWWLSIGLVEAFLLDMGLILFFLPYT 143

Query: 122 YLFNLLFD 129
             FN  +D
Sbjct: 144 MAFNWSYD 151



 Score = 32.3 bits (72), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 70  GRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIYTYLFNLLFD 129
            +    R  HA+ FEG  V++  P+ +  +   L    AL        M++  LFN LFD
Sbjct: 24  DKTLKERIFHALAFEGLAVLLTAPVLSLVMNKPLAHMGALTLMFSTVAMLWNMLFNSLFD 83

Query: 130 R 130
           R
Sbjct: 84  R 84


>RSp1513 [S] COG4125 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 145

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 1/124 (0%)

Query: 6   RKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFERWEAR 65
            ++++A  FE +A +      +   G       A  ++ + +A  WN  FN +FER E R
Sbjct: 11  ERVLHALAFELIATLICAPLFSWLMGLPLAQMGALTILFALVAMAWNMAFNAVFERIERR 70

Query: 66  QPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIYTYLFN 125
              R R  A RAAHA+ FEGGLVV+LVPL A WLG+SL +AL LD GL++FF+ YT+ FN
Sbjct: 71  CGWR-RTLAVRAAHAVAFEGGLVVLLVPLGAAWLGVSLLEALMLDIGLMLFFLPYTFCFN 129

Query: 126 LLFD 129
           L +D
Sbjct: 130 LAYD 133



 Score = 35.4 bits (80), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 75  RRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIYTYLFNLLFDRI 131
            R  HA+ FE    ++  PLF+W +G+ L Q  AL     +  M +   FN +F+RI
Sbjct: 11  ERVLHALAFELIATLICAPLFSWLMGLPLAQMGALTILFALVAMAWNMAFNAVFERI 67


>SMa1780 Non COG
          Length = 147

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 1   MQGFKRKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFE 60
           M+ F  ++ +A LFE + ++  T            H     + S+TIA +WNF+FN  F+
Sbjct: 3   MRTFPDRIRHALLFEAIGLMIITPVAAYLFNKPIMHMGVVGIGSATIATIWNFVFNLGFD 62

Query: 61  RWEARQ-PRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMI 119
               R      + F  R  H + FE GL+ +L+P  AW+L + L++ L LD  ++ F+++
Sbjct: 63  HGMRRMFGDTNKTFKMRLVHTVLFEIGLLAILLPPIAWYLNMGLFETLQLDLAIVAFYLV 122

Query: 120 YTYLFNLLFDRIFGLPSS 137
           Y ++FN+ +DR+F +P+ 
Sbjct: 123 YNFVFNVAYDRVFPVPAG 140


>AGc3030 [S] COG4125 Predicted membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 145

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 5/139 (3%)

Query: 1   MQGFKRKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFE 60
           M+  + ++ +A  FE + ++       +  G          +VS+T+A +WN+++N  F+
Sbjct: 1   MRSLQDRIRHALSFEIIGLMLVIPLGALLFGMPMEDIGIVGLVSATLATVWNYVYNLGFD 60

Query: 61  RWEARQPRRG---RNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFF 117
              A Q  +G   +  A R AHA+ FE GL+++L+P  AW+L ISL  AL +D    +F+
Sbjct: 61  --HAMQRLKGTTLKTPAIRVAHAVLFELGLLIVLMPFIAWYLNISLVHALVMDISFALFY 118

Query: 118 MIYTYLFNLLFDRIFGLPS 136
           ++Y ++FN  +DRIF LP 
Sbjct: 119 VVYAFVFNWSYDRIFPLPE 137