BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4413.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing prot... 228 1e-59 SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing prot... 145 1e-34 PA2696 [K] COG2207 AraC-type DNA-binding domain-containing prote... 139 8e-33 mll0489 [K] COG2207 AraC-type DNA-binding domain-containing prot... 138 2e-32 SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing prot... 102 1e-21 >SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 364 Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/288 (41%), Positives = 172/288 (59%), Gaps = 5/288 (1%) Query: 13 RSDSLGCSATHLKQSQELQGSEFSFYRKRVEGQEVSQVYTPASDRGFLVGISLAPRHQRS 72 R DSLGCS L + ++G + SF+RKR +V TPA+ RG+L+G+S A H R Sbjct: 73 RHDSLGCSMDRLDDDRTIEGRDMSFHRKRSASAPPGRVTTPATGRGYLLGLSAAGGHSRR 132 Query: 73 ILRGRQRTQFDFAPGAVYTRDFSEDYRADLQTPFDFLLVELPLSWFAAASDELRGRRVSG 132 I++ T DF AVY R+F++DY ADL FDF+L+E+ + +D R VS Sbjct: 133 IIKEHHSTVHDFEQNAVYLRNFADDYCADLSGSFDFMLLEINHNALERIADAADLRSVSE 192 Query: 133 LSTVTGQADPVLAHLAWALAPALAWPDPDNQLFIDQLGLAMGTHLLQRYG---GVTLPTT 189 L V ADPVL + AL + + LF+DQL +A+G H++Q+YG G + Sbjct: 193 LRPVAAHADPVLGGMLGALFATVDGSADRSALFVDQLSIAIGVHVVQQYGNGRGNVAASG 252 Query: 190 RPVRLSRLHEERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQWLLVQ 249 R RLS + R K+++ ++ G + + +A CN+S + FLRAF+ + G TPH+WL Q Sbjct: 253 R--RLSSRCQARIKDLVQSQLNGELTVEQLASACNLSQATFLRAFRETMGKTPHRWLQQQ 310 Query: 250 RVEMAREYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRR 297 R+E A + L+ +Q L+EIA C F DQSHF+R F Q +G+TPGAWRR Sbjct: 311 RIEKAVDLLQFSQTQLSEIASVCGFSDQSHFTRAFVQAMGATPGAWRR 358 >SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 119/226 (52%), Gaps = 1/226 (0%) Query: 75 RGRQRTQFDFAPGAVYTRDFSEDYRADLQTPFDFLLVELPLSWFAAASDELRGRRVSGLS 134 RG + A ++ D + ++ +PFD + +P S A ++E+ L+ Sbjct: 67 RGELVYEGGHAKASLAITDLRDQWQCHHLSPFDNIRFHIPFSRMRAFAEEVGRSEYMALA 126 Query: 135 TVTGQADPVLAHLAWALAPALAWPDPDNQLFIDQLGLAMGTHLLQRYGGVTLPTTRPVRL 194 V G+ DPV+ LA AL P+L P N LF++Q+ LAM HL Q YGG+ P + L Sbjct: 127 CVQGRIDPVMHGLAQALLPSLDDPSDANPLFLEQINLAMLAHLSQTYGGLHFPVDKKGTL 186 Query: 195 SRLHEERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQWLLVQRVEMA 254 S E A + L I D+A C +S SYF +AFK S G TP +WL RV Sbjct: 187 SPWQERLATDFLASHFNKPFSIGDLASRCGLSRSYFNKAFKESFGRTPSKWLTEYRVARV 246 Query: 255 REYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRRKLR 300 +E L LS+AE+++ C F DQSH +RVF+ + G TP +RRK R Sbjct: 247 KEMLL-LDLSIAEVSINCGFADQSHMTRVFTSLTGDTPARFRRKNR 291 >PA2696 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 297 Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 100/165 (60%) Query: 136 VTGQADPVLAHLAWALAPALAWPDPDNQLFIDQLGLAMGTHLLQRYGGVTLPTTRPVRLS 195 + G DPV+ HLA AL P+ A N+LFI+Q+ LA+ TH+ R+ +P L+ Sbjct: 126 IIGVDDPVVYHLALALLPSFARAGERNELFIEQVMLALLTHVQDRFASTQVPVCTGKGLA 185 Query: 196 RLHEERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQWLLVQRVEMAR 255 RAKE++ + V + +A EC +S SYF +AFK STG +PH+WL+ RV+ A+ Sbjct: 186 PWQLRRAKELIAGHLAEGVSVARLAEECGLSRSYFTKAFKCSTGVSPHEWLMRMRVDRAK 245 Query: 256 EYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRRKLR 300 E + + L++I VAC F DQ HFSR+F ++ G++P WRR R Sbjct: 246 ELMLGSDEPLSQIGVACGFSDQPHFSRIFLRLAGASPSTWRRVKR 290 >mll0489 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 313 Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 5/215 (2%) Query: 87 GAVYTRDFSEDYRADLQTPFDFLLVELPLSWFAAASDELRGRRVSGLSTVTGQA--DPVL 144 G RD A + P + +P + F +++L R +S L+ V Q D V+ Sbjct: 96 GHTILRDLQRKPNAIIMGPHHTVHFYIPRATFNTVAEDLEARSISELAYVPAQPIDDDVI 155 Query: 145 AHLAWALAPALAWPDPDNQLFIDQLGLAMGTHLLQRYGGVTLPTTRPVR--LSRLHEERA 202 L + A+ P+ N+LF+D L +A HL Q YGG+ P + R L+ A Sbjct: 156 RGLIGTVRAAIKAPEETNRLFLDHLMMAAAVHLAQTYGGLK-PRSLQHRGGLAPWQARLA 214 Query: 203 KEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQWLLVQRVEMAREYLRHTQ 262 E+L + G + + D+A C +S SYF +AF +TG PHQWLL +RVE A+ + + + Sbjct: 215 IELLEGDLTGQLPLKDVAAACKLSVSYFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEK 274 Query: 263 LSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRR 297 +LAE+A++C F DQSHF+RVF ++VG++P WRR Sbjct: 275 TTLAEVALSCGFSDQSHFTRVFVRLVGTSPATWRR 309 >SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 111/261 (42%), Gaps = 5/261 (1%) Query: 41 RVEGQEVSQVYTPASDRGFLVGISLAPRHQRSILRGRQRTQFDFAPGAVYTRDFSEDYRA 100 R+ G+ V P FL+ H G + F G+V D + Sbjct: 41 RLNGEANRLVSLPPDSAYFLMLYLKDAYHCDVAPDGTESETLRFRQGSVCLVDLAHGACI 100 Query: 101 DLQTPFDFLLVELPLSWFAAASDELRGRRVSGLSTVTGQADPVLAHLAWALAPALAWPDP 160 L + D L +LP S+ R + L G+ D VL +L AL P Sbjct: 101 RLFSDLDSLAFQLPRELIREVSEFSAAPRATTLRCRRGEDDDVLRNLGAALLPLFERQGN 160 Query: 161 DNQLFIDQLGLAMGTHLLQRYG---GVTLPTTRPVRLSRLHEERAKEMLLQKVKGNVCIP 217 + + + +A+ HLL YG G P R + + E AK ++ + Sbjct: 161 FHTAVLQHIAIAICAHLLHAYGDHGGQGGP--RSTQFTVWQERAAKNFMIDHFADQFPMA 218 Query: 218 DIARECNMSASYFLRAFKASTGYTPHQWLLVQRVEMAREYLRHTQLSLAEIAVACDFYDQ 277 A +S F+ +FK TG TP QWLL R A++YL L+LAEIA C F D+ Sbjct: 219 AAASAAGVSIRRFIESFKRVTGQTPKQWLLGYRTARAKQYLGERSLTLAEIATGCGFTDE 278 Query: 278 SHFSRVFSQVVGSTPGAWRRK 298 HF++VF +V G+TP AWR + Sbjct: 279 DHFTKVFRRVAGTTPAAWRAR 299