BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4412.p (519 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0052 [T] COG0642 Signal transduction histidine kinase Bme B... 170 6e-42 AGl216 [T] COG0642 Signal transduction histidine kinase Atu Agro... 155 2e-37 AGl1117_2 [T] COG0642 Signal transduction histidine kinase Atu A... 155 2e-37 mll0989_2 [T] COG0642 Signal transduction histidine kinase Mlo M... 153 1e-36 CC0759_2 [T] COG0642 Signal transduction histidine kinase Ccr Ca... 149 1e-35 >BMEII0052 [T] COG0642 Signal transduction histidine kinase Bme Brucella melitensis Length = 355 Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 148/241 (61%) Query: 276 QAEYAIRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPDLEH 335 AE +R ++ + R+AR T+GQLT+SIAHE++QPL++I +A A RWL + P+ E Sbjct: 108 SAEIDVRESRERLLRLARMTTLGQLTSSIAHEVSQPLVAIEISASAGRRWLAQSPPNNER 167 Query: 336 ARAGLRDIISEGQRAGGIISGLQDLTRNRAPEFERVNLHALIRHILTLSRSQLEQREVSL 395 A A + I + RA I+ ++ L+R P +++ ++R I+ L+ +++ + +++L Sbjct: 168 AAAAIERISVDSHRAIEILDRVRRLSRGEKPHVAPFDINEVVRDIVELAHNEITRHDIAL 227 Query: 396 TLSLMPADVFVLGDPVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRVEVRVQ 455 L L P L D VQ+QQV+ NLV+NAI+A+ P R L I+ + R++V V+ Sbjct: 228 DLDLTPGLPMALADRVQIQQVIGNLVLNAIEAIQEKDPPVRSLKINTALTEGARLQVAVR 287 Query: 456 DSGVGIAAEAMSRVFDAFYTTKENGMGMGLAICRSIIEAHRGRLRVMAAEPQGTLFFFDL 515 DSG GIA R+FDAF+TTK+ G G+GL I R+I+E+ G + + + P GT F++ Sbjct: 288 DSGGGIAPADQERLFDAFWTTKKGGFGLGLTISRTIVESSGGTIALGSTTPHGTTILFEV 347 Query: 516 P 516 P Sbjct: 348 P 348 >AGl216 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 526 Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 3/281 (1%) Query: 237 ICRQDTGEIRY-LSGIGKPVWVDGTFTEYMGTATDITVRRQAEYAIRAAQVDVERVARAN 295 + R D+GE + L I P +F + + D+T R A+ AQ ++ + ++A Sbjct: 240 VVRTDSGEDKLVLLSISFPAEA-ASFNRVVVSMVDVTQREMELKALAEAQAELTKASKAA 298 Query: 296 TVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPDLEHARAGLRDIISEGQRAGGIIS 355 VG ++AS++HE+NQPL +I+ NA LRWL+R PDL AR +I +G+RA II Sbjct: 299 AVGAMSASLSHELNQPLGAIIVNAQTLLRWLDRDPPDLAAARRSAERMIRDGERASDIIQ 358 Query: 356 GLQDLTRNRAPEFERVNLHALIRHILTLSRSQLEQREVSLTLSLMPADVFVLGDPVQLQQ 415 + L + + + E +L I L+L +LE+ ++ + A + ++LQQ Sbjct: 359 NTRSLLAHTSGKVETFDLDEFIDETLSLLEHELERSGTTVHVE-NEATPPITAVRIELQQ 417 Query: 416 VMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRVEVRVQDSGVGIAAEAMSRVFDAFYT 475 V++NL+ NAI AM + R + + + +++ V+DSG G A+ ++F F+T Sbjct: 418 VLINLLTNAIQAMDEAGISNRTITVRKEREDGDNIQIAVEDSGPGFPAQMKDKLFSPFFT 477 Query: 476 TKENGMGMGLAICRSIIEAHRGRLRVMAAEPQGTLFFFDLP 516 TKE GMGMGL+ICR+ +EA GRL G +F +P Sbjct: 478 TKETGMGMGLSICRTTLEARGGRLTGDNHPLGGAVFTISMP 518 >AGl1117_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 248 Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 141/241 (58%), Gaps = 4/241 (1%) Query: 276 QAEYAIRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPDLEH 335 QA+ + A ++ R ++A ++ +L+ASIAHE+NQPL ++++ + A RWL P++E Sbjct: 3 QAQEELSRAHENLARSSQAASLAELSASIAHEVNQPLSAVMNYSSACQRWLTAEPPNIER 62 Query: 336 ARAGLRDIISEGQRAGGIISGLQDLTRNRAPEFERVNLHALIRHILTLSRSQLEQREVSL 395 A+ L I+ A ++S ++ L R + + L A++R L + +R + + Sbjct: 63 AQKTLERIVQSANSAADVVSRIRALFRQSTDKRDSTELGAVVRQARDLLAEEAGRRRIRM 122 Query: 396 TLSLMPADVFVLGDPVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRVEVRVQ 455 T+ + V D VQ+QQV++NL+ N +DAM SV N R+L + A + V + V Sbjct: 123 TVEGESGLLLVPFDRVQIQQVLVNLLRNGMDAMASVA-NERVLQVRAFRAGDM-VRIEVA 180 Query: 456 DSGVGIAAEAMSRVFDAFYTTKENGMGMGLAICRSIIEAHRGRLRVMAAEPQGTLFFFDL 515 D G G+ + R+F+ F+TTK+ GMGMGLAICRSIIEAH G+L EP G+ F F L Sbjct: 181 DRGRGV--QFPDRIFEPFFTTKDQGMGMGLAICRSIIEAHEGQLWAEKNEPIGSKFVFTL 238 Query: 516 P 516 P Sbjct: 239 P 239 >mll0989_2 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 228 Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 121/213 (56%), Gaps = 2/213 (0%) Query: 304 IAHEINQPLMSIVSNAGASLRWLNRPVPDLEHARAGLRDIISEGQRAGGIISGLQDLTRN 363 IAHE+NQPL ++V+NAGA RWL P+ +HA + II A +I ++ L Sbjct: 1 IAHELNQPLQAVVANAGAFQRWLTADPPNFDHAGRVAQKIIRNADAAAQVIGRIRSLFSK 60 Query: 364 RAPEFERVNLHALIRHILTLSRSQLEQREVSLTLSLMPADVFVLGDPVQLQQVMLNLVIN 423 E + ++L+ALIR + L +L V L L L P D VQ++QV+LNLV N Sbjct: 61 TEGEPQPLDLNALIREVCELMGDRLASSRVMLELDLDPELPATAADHVQMEQVVLNLVRN 120 Query: 424 AIDAMTSVVPNTRLLGISASCCNEQRVEVRVQDSGVGIAAEAMSRVFDAFYTTKENGMGM 483 I+AM V R L I + ++ VEV V+D G G++ R+F+AFYTTK +GMGM Sbjct: 121 GIEAMQDVSTTARSLRIVSRGQDDGTVEVEVRDRGRGLSDP--ERIFEAFYTTKPDGMGM 178 Query: 484 GLAICRSIIEAHRGRLRVMAAEPQGTLFFFDLP 516 GL ICRSI+EAH GR+ E G F LP Sbjct: 179 GLPICRSIVEAHYGRVWAKNVEGGGASIIFSLP 211 >CC0759_2 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter vibrioides Length = 244 Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 7/230 (3%) Query: 291 VARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPDLEHARAGLRDII----SE 346 V+R +G++ +++AHE+NQPL +I + S R ++R E +A +RD I ++ Sbjct: 4 VSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMDR---GREADQAKVRDAIDRAAAQ 60 Query: 347 GQRAGGIISGLQDLTRNRAPEFERVNLHALIRHILTLSRSQLEQREVSLTLSLMPADVFV 406 RAG +I ++D R A E E +L LI L+ ++R+V + L L P V Sbjct: 61 ALRAGEVIHRMRDFARRGASEREVESLSKLIEEASALALIGEKERQVDVRLKLDPKADDV 120 Query: 407 LGDPVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRVEVRVQDSGVGIAAEAM 466 D VQ+QQV+LNL+ N IDAM + P R L I E EV V D+G GIA E + Sbjct: 121 FADRVQIQQVLLNLIRNGIDAMQAQEPRKRALLIRTGLTEEGWSEVSVADTGPGIAPEVL 180 Query: 467 SRVFDAFYTTKENGMGMGLAICRSIIEAHRGRLRVMAAEPQGTLFFFDLP 516 R+F F TTK GMG+GL+I RSIIEAH GR+ A G LF F LP Sbjct: 181 ERLFQPFMTTKPQGMGVGLSISRSIIEAHGGRIWAEANPGGGALFRFTLP 230