BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4409.p         (51 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0241 [S] COG4317 Uncharacterized protein conserved in bacteri...    67   1e-11
AGl1747 [S] COG4317 Uncharacterized protein conserved in bacteri...    63   1e-10
SMa1820 Non COG                                                        62   4e-10
PA2697 [S] COG4317 Uncharacterized protein conserved in bacteria...    45   5e-05
BH3806 [S] COG4317 Uncharacterized protein conserved in bacteria...    37   0.014

>RSc0241 [S] COG4317 Uncharacterized protein conserved in bacteria Rso
          Ralstonia solanacearum
          Length = 96

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 41/46 (89%)

Query: 1  MSAYLISLGAGMLIGVVYALFKVRSPAPPGIALIGLLGMVLGERLL 46
          M  YLISLGAG+L+G++YAL  VRSPAPP IAL+GLLGM++GE+++
Sbjct: 1  MKPYLISLGAGILVGIIYALLHVRSPAPPTIALVGLLGMLIGEQIV 46


>AGl1747 [S] COG4317 Uncharacterized protein conserved in bacteria Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 117

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 41/46 (89%)

Query: 1  MSAYLISLGAGMLIGVVYALFKVRSPAPPGIALIGLLGMVLGERLL 46
          M  YL+SLGAG+L+G+VY+L  VRSPAPP IAL+GLLG+++GE+++
Sbjct: 22 MKVYLLSLGAGLLVGIVYSLLNVRSPAPPVIALVGLLGILVGEQII 67


>SMa1820 Non COG
          Length = 102

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 39/44 (88%)

Query: 1  MSAYLISLGAGMLIGVVYALFKVRSPAPPGIALIGLLGMVLGER 44
          M  YL+SLGAG+L+GV+Y+L  VRSPAPP IAL+GLLG+++GE+
Sbjct: 7  MKMYLLSLGAGLLVGVIYSLLNVRSPAPPVIALVGLLGILVGEQ 50


>PA2697 [S] COG4317 Uncharacterized protein conserved in bacteria Pae
          Pseudomonas aeruginosa
          Length = 93

 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 1  MSAYLISLGAGMLIGVVYALFKVRSPAPPGIA 32
          M  Y+ SLGAG+L+G+VY+L +VRSPAPP +A
Sbjct: 1  MKLYVFSLGAGLLVGIVYSLLQVRSPAPPLVA 32


>BH3806 [S] COG4317 Uncharacterized protein conserved in bacteria Bha
          Bacillus halodurans
          Length = 53

 Score = 36.6 bits (83), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 1  MSAYLISLGAGMLIGVVYALFKVRSPAPPGIA-LIGLLGMVLGERLLHW 48
          M   L++  AG+ +G ++AL K+  PAPP +A ++G++G+ +G +L  W
Sbjct: 1  MQELLLAFVAGLAVGFLFALIKLPIPAPPALAGILGIVGIYVGYKLYQW 49