BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4387.p         (240 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3908 Non COG                                                         56   6e-08
STM0882 [J] COG2265 SAM-dependent methyltransferases related to ...    32   1.6  
ZybjF [J] COG2265 SAM-dependent methyltransferases related to tR...    30   4.7  
ECs0939 [J] COG2265 SAM-dependent methyltransferases related to ...    30   4.7  
ybjF [J] COG2265 SAM-dependent methyltransferases related to tRN...    30   5.2  

>PA3908 Non COG
          Length = 239

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 71  KEEDKDRDEKDVRSMAVWNGLLEE----GSILMNHTLVVREYPSKSTFS-----LQSTSV 121
           K   +DR  + V  + +WNG  EE    G + +++    R   S+         LQ    
Sbjct: 74  KALSRDRRTRAV-ELVLWNG--EEDPLKGGLSLDYEASGRAVSSRLQLEDAGSLLQVFDA 130

Query: 122 PALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAIH-KVFDDRPGVGWMLYLPKVIKASQ 180
           PA    S  + +   +LEIWP     +  P    +H + F DR  +GW+ + P  ++A+ 
Sbjct: 131 PA----SSFVAIFLAVLEIWPETTWGMLAPHAYFVHQRTFPDRRSIGWIGFCPHPLRATD 186

Query: 181 VPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEEHIKVATSIEIRLVEQDLLP 235
            P A EL+ +       +GT++++   EP      EH +     +I+L+E   LP
Sbjct: 187 FPAATELVDI-----PGRGTLLLN-GREPMDETRREHFERVGEADIKLMELGYLP 235


>STM0882 [J] COG2265 SAM-dependent methyltransferases related to tRNA
          (uracil-5-)-methyltransferase Sty Salmonella
          typhimurium LT2
          Length = 376

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 34 VGVPMADWCPPADTPENSLRNKA 56
           G+P+  WC P   PE   RNKA
Sbjct: 37 AGLPVEQWCAPIGGPEQHFRNKA 59


>ZybjF [J] COG2265 SAM-dependent methyltransferases related to tRNA
          (uracil-5-)-methyltransferase EcZ Escherichia coli
          O157:H7 EDL933
          Length = 375

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 37 PMADWCPPADTPENSLRNKA 56
          P+ +WC P   PE   RNKA
Sbjct: 40 PVEEWCAPVSGPEQGFRNKA 59


>ECs0939 [J] COG2265 SAM-dependent methyltransferases related to tRNA
          (uracil-5-)-methyltransferase Ecs Escherichia coli
          O157:H7
          Length = 375

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 37 PMADWCPPADTPENSLRNKA 56
          P+ +WC P   PE   RNKA
Sbjct: 40 PVEEWCAPVSGPEQGFRNKA 59


>ybjF [J] COG2265 SAM-dependent methyltransferases related to tRNA
          (uracil-5-)-methyltransferase Eco Escherichia coli K12
          Length = 375

 Score = 30.0 bits (66), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 37 PMADWCPPADTPENSLRNKA 56
          P+ +WC P   PE   RNKA
Sbjct: 40 PVEEWCAPVSGPEQGFRNKA 59