BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4375.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0146 [G] COG4213 ABC-type xylose transport system, periplas... 461 e-129 RSp1633 [G] COG4213 ABC-type xylose transport system, periplasmi... 446 e-125 xylF [G] COG4213 ABC-type xylose transport system, periplasmic c... 404 e-112 ZxylF [G] COG4213 ABC-type xylose transport system, periplasmic ... 403 e-112 ECs4449 [G] COG4213 ABC-type xylose transport system, periplasmi... 403 e-112 >BMEII0146 [G] COG4213 ABC-type xylose transport system, periplasmic component Bme Brucella melitensis Length = 319 Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/319 (69%), Positives = 266/319 (83%) Query: 20 MVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQ 79 M A A A ++P IGFSIDDLRVERWARDRD+F AAAEKLGAKV VQSAD +E++Q+ Q Sbjct: 1 MGATPAFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEKLGAKVNVQSADGNEEKQVKQ 60 Query: 80 IENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVG 139 +ENLIS+GVD IVIVP N+ V + +AK +GIKVLSYDRLILNAD+DAYISFDNE+VG Sbjct: 61 VENLISQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYDRLILNADIDAYISFDNERVG 120 Query: 140 EMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWN 199 MQA+ +LK K +GN++LLGGSPTDNNAK+ R GQ KALK +D G +KIVG QWVKEW+ Sbjct: 121 FMQAQAVLKAKPEGNYYLLGGSPTDNNAKLLRAGQEKALKEAMDSGKVKIVGSQWVKEWS 180 Query: 200 PTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKR 259 PTEALSI+ENALTA NKIDA+VASNDGTAGGAIQALAAQ LAGK VSGQD+DLAAVKR Sbjct: 181 PTEALSIMENALTATQNKIDAVVASNDGTAGGAIQALAAQGLAGKTAVSGQDSDLAAVKR 240 Query: 260 VVAGTQTMTVYKPLKQIATEAAKLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKD 319 +V GTQT+TVYKPLK IA EAAKL+VQ+ R+EKP +N + +NG K VD+LLL P +TKD Sbjct: 241 LVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFNGKINNGSKDVDTLLLTPTAVTKD 300 Query: 320 NVKVLVDDGFYTQAQIDGR 338 N+ + + DGFYT+ QI+G+ Sbjct: 301 NIDIYIKDGFYTKEQIEGK 319 >RSp1633 [G] COG4213 ABC-type xylose transport system, periplasmic component Rso Ralstonia solanacearum Length = 339 Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/314 (67%), Positives = 259/314 (82%) Query: 25 AMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLI 84 A A + P IGFSIDDLRVERW DRD+F AA+KLGA V VQSA+A+E +QI+QIENL+ Sbjct: 26 AFASKEAPVIGFSIDDLRVERWTHDRDYFVDAAKKLGATVNVQSANANEAKQIAQIENLV 85 Query: 85 SRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAE 144 ++ VDV+VIVPFN+ VL N I AKK GIKV+SYDRLILNADVD Y+SFDNEKVGEMQA+ Sbjct: 86 AQNVDVLVIVPFNSKVLGNAIASAKKKGIKVVSYDRLILNADVDGYVSFDNEKVGEMQAQ 145 Query: 145 GILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEAL 204 G++K+ KGN+FLLGG+ TDNNA++ R+GQMK LKP +DKGDIKIVGQQW EW+P++A Sbjct: 146 GVVKLAPKGNYFLLGGASTDNNARLLRDGQMKVLKPLVDKGDIKIVGQQWTPEWDPSKAQ 205 Query: 205 SIVENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGT 264 SIVENALTAN+N I IVASNDGTAGGAIQALA QKLAGKVPVSGQDADLA V+RV GT Sbjct: 206 SIVENALTANSNNIQGIVASNDGTAGGAIQALAGQKLAGKVPVSGQDADLAGVRRVAEGT 265 Query: 265 QTMTVYKPLKQIATEAAKLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKDNVKVL 324 Q +TVYKP+KQIA AA+++V+L + P +N + +NG K VD++LL P +LTKDN+ V+ Sbjct: 266 QAVTVYKPIKQIANTAAEMAVELVKGTSPKFNTKLNNGKKDVDTILLTPTMLTKDNLDVV 325 Query: 325 VDDGFYTQAQIDGR 338 + DGFYT QI G+ Sbjct: 326 IKDGFYTHQQIYGK 339 >xylF [G] COG4213 ABC-type xylose transport system, periplasmic component Eco Escherichia coli K12 Length = 330 Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/310 (61%), Positives = 248/310 (80%), Gaps = 1/310 (0%) Query: 27 ADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLISR 86 A AK KIG +IDDLR+ERW +DRD F AE LGAKV+VQSA+ +E+ Q+SQIEN+I+R Sbjct: 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80 Query: 87 GVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEGI 146 GVDV+VI+P+N VL+N +KEAK+ GIKVL+YDR+I +AD+D YISFDNEKVGE+QA+ + Sbjct: 81 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140 Query: 147 LKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEALSI 206 + + +GN+FL+GGSP DNNAK+FR GQMK LKPY+D G IK+VG QWV W P AL I Sbjct: 141 VDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKI 200 Query: 207 VENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGTQT 266 +ENALTANNNKIDA+VASND TAGGAIQAL+AQ L+GKV +SGQDADLA +KR+ AGTQT Sbjct: 201 MENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQT 260 Query: 267 MTVYKPLKQIATEAAKLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKDNVK-VLV 325 MTVYKP+ +A AA+++V+L ++P + +NG K V S LL PI + K+N+K ++ Sbjct: 261 MTVYKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVI 320 Query: 326 DDGFYTQAQI 335 DGF+ ++++ Sbjct: 321 KDGFHKESEL 330 >ZxylF [G] COG4213 ABC-type xylose transport system, periplasmic component EcZ Escherichia coli O157:H7 EDL933 Length = 330 Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust. Identities = 189/310 (60%), Positives = 248/310 (80%), Gaps = 1/310 (0%) Query: 27 ADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLISR 86 A AK KIG +IDDLR+ERW +DRD F AE LGAKV+VQSA+ +E+ Q+SQIEN+I+R Sbjct: 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80 Query: 87 GVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEGI 146 GVDV+VI+P+N VL+N +KEAK+ GIKVL+YDR+I +AD+D YISFDNEKVGE+QA+ + Sbjct: 81 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140 Query: 147 LKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEALSI 206 + + +GN+FL+GGSP DNNAK+FR GQMK L+PY+D G IK+VG QWV W P AL I Sbjct: 141 VDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLQPYVDSGKIKVVGDQWVDGWLPENALKI 200 Query: 207 VENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGTQT 266 +ENALTANNNKIDA+VASND TAGGAIQAL+AQ L+GKV +SGQDADLA +KR+ AGTQT Sbjct: 201 MENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQT 260 Query: 267 MTVYKPLKQIATEAAKLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKDNVK-VLV 325 MTVYKP+ +A AA+++V+L ++P + +NG K V S LL PI + K+N+K ++ Sbjct: 261 MTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVI 320 Query: 326 DDGFYTQAQI 335 DGF+ ++++ Sbjct: 321 KDGFHKESEL 330 >ECs4449 [G] COG4213 ABC-type xylose transport system, periplasmic component Ecs Escherichia coli O157:H7 Length = 330 Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust. Identities = 189/310 (60%), Positives = 248/310 (80%), Gaps = 1/310 (0%) Query: 27 ADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLISR 86 A AK KIG +IDDLR+ERW +DRD F AE LGAKV+VQSA+ +E+ Q+SQIEN+I+R Sbjct: 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80 Query: 87 GVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEGI 146 GVDV+VI+P+N VL+N +KEAK+ GIKVL+YDR+I +AD+D YISFDNEKVGE+QA+ + Sbjct: 81 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140 Query: 147 LKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEALSI 206 + + +GN+FL+GGSP DNNAK+FR GQMK L+PY+D G IK+VG QWV W P AL I Sbjct: 141 VDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLQPYVDSGKIKVVGDQWVDGWLPENALKI 200 Query: 207 VENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGTQT 266 +ENALTANNNKIDA+VASND TAGGAIQAL+AQ L+GKV +SGQDADLA +KR+ AGTQT Sbjct: 201 MENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQT 260 Query: 267 MTVYKPLKQIATEAAKLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKDNVK-VLV 325 MTVYKP+ +A AA+++V+L ++P + +NG K V S LL PI + K+N+K ++ Sbjct: 261 MTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVI 320 Query: 326 DDGFYTQAQI 335 DGF+ ++++ Sbjct: 321 KDGFHKESEL 330