BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4347.p (258 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1831 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp... 285 9e-77 all5044 [E] COG3842 ABC-type spermidine/putrescine transport sys... 169 7e-42 YPO3627 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 167 2e-41 CC3134 [E] COG3842 ABC-type spermidine/putrescine transport syst... 166 4e-41 MA0063 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp... 165 7e-41 >CC1831 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Ccr Caulobacter vibrioides Length = 253 Score = 285 bits (728), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 136/242 (56%), Positives = 174/242 (71%) Query: 1 MSYIDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 M+ + RNVW +Y VVLE + L + +G F ++VG SG GKSTFLRL++GQE P++G + Sbjct: 1 MALLSFRNVWVEYGDKVVLENVELSIAQGSFVSIVGPSGAGKSTFLRLVIGQEAPTRGAI 60 Query: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQ 120 L+G+ AEP RGVVFQ+YSVFPHL+ DNV GL+ + L G+L G +R A EQ Sbjct: 61 DLEGRNLRAEPGPDRGVVFQKYSVFPHLSARDNVVFGLDCAGSALRGKLSGAKRRAALEQ 120 Query: 121 AAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 A +L VGLG + +LYP+ +SGGMQQRLAIAQALI +PR+LLLDEPFGALDPG+R +MH Sbjct: 121 ADAMLAAVGLGDSGDLYPAKMSGGMQQRLAIAQALIKKPRILLLDEPFGALDPGVRLDMH 180 Query: 181 TLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA 240 L+ LW+D+GLT+ MVTHD+ E F LGTR+L FDK R DP P YGA YD L++ Sbjct: 181 ELITSLWRDNGLTIMMVTHDIKEAFKLGTRVLAFDKRRRDPHAPHRYGATAVYDFPLDKP 240 Query: 241 RA 242 A Sbjct: 241 GA 242 >all5044 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Nos Nostoc sp. PCC 7120 Length = 381 Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 136/219 (62%), Gaps = 11/219 (5%) Query: 4 IDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 +++RNV++ ++Q + ++L V +G+F +++G SGCGK+T LRL+ G E+ G+LL+Q Sbjct: 22 VELRNVFKFFNQEPAVHGVDLDVRQGEFFSILGPSGCGKTTTLRLIAGFEQVDAGKLLIQ 81 Query: 64 GQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQA 121 GQP P R V VFQ Y++F HLNV DNVA GL RL K + Sbjct: 82 GQPMTNIPPYRRPVNTVFQSYALFNHLNVWDNVAFGL---------RLKKSRKSEVESRV 132 Query: 122 AQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHT 181 + L V + + +PS LSGG QQR+A+A+AL+ RP V+LLDEP GALD +RKEM Sbjct: 133 KEALKLVKMESLRSRFPSQLSGGQQQRVALARALVNRPAVVLLDEPLGALDLKLRKEMQV 192 Query: 182 LLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 L +L ++ GLT MVTHD E +L R+ V ++ +++ Sbjct: 193 ELSNLHKNLGLTFVMVTHDQEEALSLSDRIAVMNQGKIE 231 >YPO3627 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Ype Yersinia pestis Length = 271 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/250 (41%), Positives = 141/250 (56%), Gaps = 29/250 (11%) Query: 4 IDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 I + ++ ++Y VL+ L LR+ GQF +VG SGCGKST LRLL G E S G LL Sbjct: 13 ITLESIGKRYGNRTVLDNLQLRITAGQFVAVVGRSGCGKSTLLRLLAGLEAASDGTLLSG 72 Query: 64 GQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQAAQ 123 D TR ++FQ + P V+DNV +GL + R++A Q Sbjct: 73 NALLSHAKDETR-LMFQEARLLPWKKVIDNVGLGL---------------RGHWRDEALQ 116 Query: 124 LLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHTLL 183 +L VGL N +P++LSGG +QR+A+A+ALI RPR+LLLDEP GALD R EM L+ Sbjct: 117 VLDTVGLADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQGLI 176 Query: 184 LDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEARAR 243 LWQ G TV +VTHD+SE L R+L+ ++ R I D+A++ R R Sbjct: 177 ERLWQQHGFTVLLVTHDVSEAIALADRVLLIEEGR------------IGLDLAIDLPRPR 224 Query: 244 EQ-AGKLASL 252 + + KLA+L Sbjct: 225 RKGSAKLAAL 234 >CC3134 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Ccr Caulobacter vibrioides Length = 381 Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/215 (43%), Positives = 129/215 (60%), Gaps = 11/215 (5%) Query: 4 IDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 I NV +++ + ++ ++L V EG+F L+G SGCGK+T LR+L G E P++G++L+ Sbjct: 15 ITFENVTKRFGKLAAVDNVSLTVNEGEFFALLGPSGCGKTTLLRMLAGFETPTEGRILID 74 Query: 64 GQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQA 121 GQ P R V VFQ Y+VFPH+ V DNVA GL++ P ++R AR Sbjct: 75 GQDISNVPPNKRPVNMVFQSYAVFPHMTVADNVAYGLKVDNVP-------KAEREAR--V 125 Query: 122 AQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHT 181 A+ L V LG P LSGG +QR+A+A+AL+ RPRVLLLDEP ALD +R++M T Sbjct: 126 AEALELVQLGGLGGRKPDQLSGGQRQRVALARALVKRPRVLLLDEPLSALDAKLREQMRT 185 Query: 182 LLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDK 216 L L + G+T MVTHD E L +R V K Sbjct: 186 ELCTLQEKVGITFIMVTHDQDEALALASRCAVMSK 220 >MA0063 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Mac Methanosarcina acetivorans str.C2A Length = 268 Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 124/220 (56%), Gaps = 16/220 (7%) Query: 1 MSYIDIRNVWQQYDQ------NVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQER 54 M + ++NV + + + L ++ V++G+F L+G SGCGK+T LR+ G E Sbjct: 15 MGRVSVKNVSRVFSKKEDESGTEALHNISFDVQDGEFICLLGPSGCGKTTLLRIAAGLET 74 Query: 55 PSKGQLLLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSK 114 + G++ L G P PD RG+VFQ+YS+FP V+DN+ GLE+ G K Sbjct: 75 LTSGEITLNGVPITG-PDPKRGMVFQQYSLFPWRTVIDNITFGLEMQ---------GIKK 124 Query: 115 RRAREQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPG 174 AR+Q + L VGLG N YP LSGGMQQR AIA+AL P VLL+DEPFGALD Sbjct: 125 SEARKQVEKYLELVGLGQFKNSYPHELSGGMQQRAAIARALANEPEVLLMDEPFGALDAQ 184 Query: 175 IRKEMHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVF 214 R + LL +W+ +T VTH + E L R++V Sbjct: 185 TRNVLQDELLKIWEQKHVTFLFVTHSVDEAVFLSDRIVVM 224