BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4346.p         (243 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1827 Non COG                                                        150   2e-36
CC1828 Non COG                                                         92   1e-18
DR0613 [S] COG3665 Uncharacterized conserved protein Dra Deinoco...    59   9e-09
AGc2528 [S] COG3665 Uncharacterized conserved protein Atu Agroba...    42   9e-04
BS_ycgI [S] COG3665 Uncharacterized conserved protein Bsu Bacill...    33   0.54 

>CC1827 Non COG
          Length = 279

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 122/231 (52%), Gaps = 4/231 (1%)

Query: 12  LYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLKGQHTAR 71
           +++E +  GG+ S  L RG  LR+TD+ G A VS+++ NA+QP ERLN+ DTLK Q    
Sbjct: 51  VWDETIAPGGYASRRLSRGARLRLTDLRGDAAVSLLVFNAEQPVERLNIADTLKVQWNGY 110

Query: 72  LQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVQEKYGQGRYQELRNGFYRNGVD 131
           L  G  L SDMGRVLA++ EDT G HD+F G  N      KYG G      +G + N  D
Sbjct: 111 LGQGRLLLSDMGRVLASLVEDTAGAHDAFCGASNQASNTRKYGDG----FNHGDHPNARD 166

Query: 132 NLLVEMGKWNLDLQDLLMVVNLFSRVAVDEQGVFHFVPGNAKAGDYIELAAPMETLIILT 191
              + + K+ L  +D+   +NLF  V + + G      G    G ++ L A M  +++L 
Sbjct: 167 RFSLGVAKFGLGRKDIHPCLNLFKEVRIGQGGETVVDVGPYPPGRFVTLRAEMALIVVLA 226

Query: 192 ALQHPMDPHPHYAPRPVRLEWLDTHSDDSTHACRHSRPENERAFHNTERFY 242
              H +DP P YA  PVR           +   R++ PE  RAF N E ++
Sbjct: 227 NCPHVLDPRPDYAVTPVRATAWRGPVTPESDPIRNATPEGLRAFLNVEDYF 277


>CC1828 Non COG
          Length = 208

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 6/199 (3%)

Query: 12  LYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLKGQHTAR 71
           +++E++P        +K GQ+LRI D+EG   V  ++ +A   +ER +  DT+  Q    
Sbjct: 12  VHDEVVPARAPWLHAVKAGQTLRIVDLEGNQAVDFLVYSAADDAERYSAQDTIAAQKNIF 71

Query: 72  LQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVQEKYGQGRYQELRNGFYRNGVD 131
           L+ G  L S+ G  +  +T     +HD+ GG  + E    +YG     +         V+
Sbjct: 72  LREGSVLLSNEGAAMMTVTATAVAYHDTIGGACSCESNTLRYGHHTKAQ------HACVE 125

Query: 132 NLLVEMGKWNLDLQDLLMVVNLFSRVAVDEQGVFHFVPGNAKAGDYIELAAPMETLIILT 191
           N LV   +     +D++  VN F  V V+  G    V G +  G +++L A M+ +++++
Sbjct: 126 NFLVANARQGRGKRDMVSNVNWFMNVPVEADGALGIVDGISAPGLFVDLRAEMDVVVVVS 185

Query: 192 ALQHPMDPHPHYAPRPVRL 210
                 +P   + P PVR+
Sbjct: 186 NCPQINNPCNGFNPTPVRM 204


>DR0613 [S] COG3665 Uncharacterized conserved protein Dra Deinococcus
           radiodurans
          Length = 216

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 12/197 (6%)

Query: 1   MSKQALALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNA-----QQPS 55
           M++ ++  +A+ Y  + P  G T F L +G  L + D  G     +M   A     +  +
Sbjct: 1   MTQPSIPTEAQPYR-IAPQTG-TGFRLSKGDVLVVIDPLGEQVSDLMAFAADTVGSEGQA 58

Query: 56  ERLNLPDTLKGQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVQEKYGQ 115
           E L+   T     T  L  GH LYS+  RV+  +  D  G HD      + E  +  Y  
Sbjct: 59  EWLSSGRTFDYNETIYLTTGHQLYSNRSRVMFTLLRDDVGRHDFLLTPCSTETFEILYPP 118

Query: 116 GRYQELRNGFYRNGVDNLLVEMGKWNLDLQDLLMVVNLFSRVAVDEQGVFHFVPGNAKAG 175
           G  +   + F      NL+     + ++   +   +N+F  V VDE+G  +  P  ++ G
Sbjct: 119 GTAEGHPSCF-----GNLVKAFAPFGIEPDQIPTTLNIFMNVLVDEKGKVNIGPPISQPG 173

Query: 176 DYIELAAPMETLIILTA 192
             +EL A M+ ++ LTA
Sbjct: 174 QRLELRAEMDLIVGLTA 190


>AGc2528 [S] COG3665 Uncharacterized conserved protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 318

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 4   QALALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDT 63
           QA     ++ E ++P  G  +F + +G   RI  IEG     + + NA   +ER      
Sbjct: 74  QAKNGMEKIDEVIIPPRGGRTFTVPKGHFFRIVSIEGPQVGDLNLWNAHDLNERF-FSGK 132

Query: 64  LKGQHTARLQAGHCLYSDMG--RVLAAITEDTCGWH--DSFGG 102
            +  H   +  G+ L+S++   R +A IT DT  W+  D  GG
Sbjct: 133 TRALHATHVSVGNRLWSNLPSLRPMATITHDTLSWYGFDEDGG 175


>BS_ycgI [S] COG3665 Uncharacterized conserved protein Bsu Bacillus subtilis
          Length = 244

 Score = 33.1 bits (74), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 18/170 (10%)

Query: 31  QSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLKGQHTARLQAGHCLYSD--MGRVLAA 88
           Q L++ D+EG      +  +A+   E L+   T+   H+  ++    LYS+  + R L  
Sbjct: 67  QILKVVDVEGQQVADFVAYHAKDSYEHLDQGATIDAIHSIHVKVSDHLYSNPVLSRWLPL 126

Query: 89  ITEDT------CGWHDSFGGVLNAEEVQEKYGQGRYQELRNGFYRNGVDNLLVEMGKWNL 142
           I EDT      C W      +  A   + K         R  F    +    V +     
Sbjct: 127 I-EDTGPASMICCWPACRPDIEQALIWEAK---------RMSFRIRAMTICAVRLSSLAY 176

Query: 143 DLQDLLMVVNLFSRVAVDEQGVFHFVPGNAKAGDYIELAAPMETLIILTA 192
                +  +       +DE+G        + AGDY+ L A M+ ++  ++
Sbjct: 177 RSPTCITHLRYCMDTVLDEEGNLSVETPLSDAGDYVRLRAEMDLIVAFSS 226