BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4340.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1312 [S] COG1284 Uncharacterized conserved protein Bme Bruce... 159 7e-39 AGc869 [S] COG1284 Uncharacterized conserved protein Atu Agrobac... 147 2e-35 AGc867 [S] COG1284 Uncharacterized conserved protein Atu Agrobac... 138 1e-32 SMc02240 [S] COG1284 Uncharacterized conserved protein Sme Sinor... 137 1e-32 VC0940 [S] COG1284 Uncharacterized conserved protein Vch Vibrio ... 84 2e-16 >BMEI1312 [S] COG1284 Uncharacterized conserved protein Bme Brucella melitensis Length = 217 Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 2/215 (0%) Query: 11 APSATSSPIASAGERSTPATTVRHNWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQVAGV 70 A A S+P S + S+P + RH ++ L G IA G+++ L+ G AG+ Sbjct: 2 ADIADSAP--SLADASSPISVDRHRLYEDAIAMLIGTSFIALGITLYSHAMLMTGSTAGI 59 Query: 71 AFLVTYVTGMSFGMAFTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVLTNIAGNYISYR 130 A L+ Y TG FG+ + LINLPFY A RMG AFT RT AAV +S T + + + Sbjct: 60 ALLIHYATGTGFGLLYFLINLPFYYFAVRRMGWAFTIRTFAAVALLSGFTRLMPLSVDFT 119 Query: 131 HLDPIVGAVLAGLCVGIGLIGLFRHQASCGGMSILASYVQERTGFKAGWLLMGFDLVLFA 190 ++P+ A++ G +G+G++ LFRH++ GG++ILA Y+Q+ G +AGW +G D+++ Sbjct: 120 SINPLFAALMGGTLMGMGVLALFRHRSGVGGVNILALYLQDAYGIRAGWFQLGLDVLIML 179 Query: 191 TAAFFLPAERVLYSLVGAITMNLFVAWNHRYEWYI 225 + FF+P E ++ SLVGA+ MN+ +A NH+ YI Sbjct: 180 ASLFFIPWENMVLSLVGAVAMNVIIAINHKPGRYI 214 >AGc869 [S] COG1284 Uncharacterized conserved protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 237 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 121/194 (62%) Query: 33 RHNWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQVAGVAFLVTYVTGMSFGMAFTLINLP 92 RH+ +++ Q L G ++I+ G+++ + GL+ G V G+AFL Y +G SFG F L NLP Sbjct: 43 RHSLLEDAQAILAGSMLISLGVTLFSAAGLLTGGVVGLAFLAHYASGFSFGAVFFLANLP 102 Query: 93 FYLLAALRMGAAFTWRTLAAVTAVSVLTNIAGNYISYRHLDPIVGAVLAGLCVGIGLIGL 152 FY LA R+G AFT +T A+ ++L+ + ++ ++PI A+ GL V G++ L Sbjct: 103 FYYLAFRRLGLAFTVKTFCAIATTALLSEYMPGFFAFESINPIAAALFGGLTVAAGMLAL 162 Query: 153 FRHQASCGGMSILASYVQERTGFKAGWLLMGFDLVLFATAAFFLPAERVLYSLVGAITMN 212 FRH+ S GG ILA Y+Q+R G++AG + + FD ++ + F +L S++GA+ MN Sbjct: 163 FRHRTSLGGFGILALYLQDRFGWRAGLVQLAFDGMVLGCSFFVATPFVILCSILGALVMN 222 Query: 213 LFVAWNHRYEWYIA 226 L +A NHR + YIA Sbjct: 223 LTLAVNHRNDRYIA 236 >AGc867 [S] COG1284 Uncharacterized conserved protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 230 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 128/200 (64%), Gaps = 3/200 (1%) Query: 26 STPATTVRHNWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQVAGVAFLVTYVTGMSFGMA 85 S PA RH ++++QG + G ++ A G +L +GL+ G AGVAFL+ Y G+SFG+ Sbjct: 31 SDPA---RHAPVEDVQGIVTGAIVSALGFYLLAKVGLLTGGTAGVAFLLHYAFGISFGLL 87 Query: 86 FTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVLTNIAGNYISYRHLDPIVGAVLAGLCV 145 F L+NLPFY L+ R+G AF+ +T A+ VSVLT + ++ ++P+ A+L GL + Sbjct: 88 FFLVNLPFYYLSFRRLGLAFSCKTFIAIGLVSVLTEVEARWMVIDSINPLWAALLGGLLL 147 Query: 146 GIGLIGLFRHQASCGGMSILASYVQERTGFKAGWLLMGFDLVLFATAAFFLPAERVLYSL 205 G GL+ L+RH+AS GG+ ILA Y+Q+R G +AG + + FD + A + V YS+ Sbjct: 148 GYGLLALYRHRASLGGIGILAIYIQDRFGIRAGLIQLAFDACVMLCAFLVIDPATVAYSI 207 Query: 206 VGAITMNLFVAWNHRYEWYI 225 VGA +N+F+A NHR + YI Sbjct: 208 VGAFVLNIFLAINHRSDRYI 227 >SMc02240 [S] COG1284 Uncharacterized conserved protein Sme Sinorhizobium meliloti Length = 211 Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 124/194 (63%) Query: 33 RHNWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQVAGVAFLVTYVTGMSFGMAFTLINLP 92 RH ++++QG G ++ A G+ L S GL+ G AGVAFL+ Y TG++FG+ F L+NLP Sbjct: 17 RHTPVEDVQGVFSGSLVAALGLYFLASAGLLTGSTAGVAFLLHYATGVNFGLTFFLLNLP 76 Query: 93 FYLLAALRMGAAFTWRTLAAVTAVSVLTNIAGNYISYRHLDPIVGAVLAGLCVGIGLIGL 152 F+ L+ R+G AFT +T A+ S LT++ + P A++ GL +G GL+ L Sbjct: 77 FFYLSLKRLGPAFTLKTFIAIALTSFLTDMQSRLFEIGQIHPGWAALIGGLLLGYGLLAL 136 Query: 153 FRHQASCGGMSILASYVQERTGFKAGWLLMGFDLVLFATAAFFLPAERVLYSLVGAITMN 212 +RH+AS GG+ IL Y+QER G +AG + + DLV+ A A F V++S++GA+ +N Sbjct: 137 YRHRASLGGVGILGIYLQERFGIRAGLVQLAIDLVVLAAAFFVTTPTVVIWSVLGAVVLN 196 Query: 213 LFVAWNHRYEWYIA 226 LFVA NHR + YIA Sbjct: 197 LFVAINHRADRYIA 210 >VC0940 [S] COG1284 Uncharacterized conserved protein Vch Vibrio cholerae Length = 198 Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 4/192 (2%) Query: 33 RHNWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQVAGVAFLVTYVTGMSFGMAFTLINLP 92 + +WI L G ++A G+ L + L+ G G+A L+T ++FG+ + L N P Sbjct: 7 KEDWIAILTGTF----LVAQGVYFLQAGQLLTGGTTGLALLMTQFLPLTFGVLYFLSNCP 62 Query: 93 FYLLAALRMGAAFTWRTLAAVTAVSVLTNIAGNYISYRHLDPIVGAVLAGLCVGIGLIGL 152 FYLLA R GA F + + + VS+ + I+ ++ + AV GL +G+G++ L Sbjct: 63 FYLLAWKRFGARFAFNSAISGALVSIFADHLAMLITLEKVNVVYCAVAGGLLMGLGMLIL 122 Query: 153 FRHQASCGGMSILASYVQERTGFKAGWLLMGFDLVLFATAAFFLPAERVLYSLVGAITMN 212 FRH++S GG ++L ++Q+R G G M D ++ + FF+ + S++GA +N Sbjct: 123 FRHRSSLGGFNVLCLFIQDRFGISVGKSQMAIDGLILLASFFFVSPLTIGLSILGAFLLN 182 Query: 213 LFVAWNHRYEWY 224 + +A NH+ Y Sbjct: 183 IVLAMNHKPSRY 194